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View Structure Prediction Details

Protein: NDA1_ARATH
Organism: Arabidopsis thaliana
Length: 510 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDA1_ARATH.

Description E-value Query
Range
Subject
Range
gi|21536893 - gi|21536893|gb|AAM61225.1| putative NADH dehydrogenase (ubiquinone oxidoreductase) [Arabidopsis thal...
322.0 [0..1] [510..1]

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Predicted Domain #1
Region A:
Residues: [1-510]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLWIKNLARI SQTTSSSVGN VFRNPESYTL SSRFCTALQK QQVTDTVQAK EDVVNALEPQ  60
   61 RYDGLAPTKE GEKPRVLVLG SGWAGCRVLK GIDTSIYDVV CVSPRNHMVF TPLLASTCVG 120
  121 TLEFRSVAEP ISRIQPAISR EPGSYYFLAN CSKLDADNHE VHCETVTEGS STLKPWKFKI 180
  181 AYDKLVLACG AEASTFGING VLENAIFLRE VHHAQEIRRK LLLNLMLSEV PGIGEDEKKR 240
  241 LLHCVVVGGG PTGVEFSGEL SDFIMKDVRQ RYSHVKDDIR VTLIEARDIL SSFDDRLRHY 300
  301 AIKQLNKSGV KLVRGIVKEV KPQKLILDDG TEVPYGPLVW STGVGPSSFV RSLDFPKDPG 360
  361 GRIGIDEWMR VPSVQDVFAI GDCSGYLEST GKSTLPALAQ VAEREGKYLA NLFNVMGKAG 420
  421 GGRANSAKEM ELGEPFVYKH LGSMATIGRY KALVDLRESK EGKGISMAGF LSWFIWRSAY 480
  481 LTRVVSWRNR FYVAINWLTT FVFGRDISRI 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 63.69897
Match: 1zy8A
Description: The crystal structure of dihydrolipoamide dehydrogenase and dihydrolipoamide dehydrogenase-binding protein (didomain) subcomplex of human pyruvate dehydrogenase complex.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle