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View Structure Prediction Details

Protein: DNJ39_ARATH
Organism: Arabidopsis thaliana
Length: 414 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DNJ39_ARATH.

Description E-value Query
Range
Subject
Range
DNAJ_BURCE - Chaperone protein dnaJ - Burkholderia cepacia (Pseudomonas cepacia)
DNAJ_BURML - (Q5NSW9) Chaperone protein dnaJ
DNAJ_BURM1 - Chaperone protein DnaJ OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=dnaJ PE=3 SV=1
282.0 [0..19] [374..1]

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Predicted Domain #1
Region A:
Residues: [1-138]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATHSSRSEN KDAGEEDELR RRNPYEVLGI PSNSTDQEIK SAYRRMALRY HPDKNPDDPV  60
   61 AAEMFKEVTF AYEVLSDPEN RRLYDTTGSE AVGPENEDLE LDLSSLGAVN TIFAALFNKL 120
  121 GVQIKTTVSA NLLGEALN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.522879
Match: 1xblA
Description: NMR STRUCTURE OF THE J-DOMAIN (RESIDUES 2-76) IN THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 2-108) OF THE MOLECULAR CHAPERONE DNAJ, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [139-414]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTVTTLPLMV GQVVSRKVEK QSAHFYSVTL TEEEAQDGLI CKVHSSAKNK FKLLYFDQVE  60
   61 NGGLSLALQE DSRKTGKLST AGLYFFGFPV YRFDHRVNSR ALSRDPETGF FKRLDAFQPF 120
  121 EITELKAGSH VFAVYGDNFF KSVSYTLEIF SSAPFGNEKE SLRSTEAQIV SKRTELLKFE 180
  181 AEYHEVFAQF TEMASKCTGE VQEIDELLKR RNEICAAYTI FPPTKQGSSK SRSWSKKKSS 240
  241 LLMEPREEGE VAVREEGGVK KKKWYNIQLR QDKKKN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.522879
Match: 2q2gA
Description: No description for 2q2gA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle