YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|186510839, gi...
Organism:	Arabidopsis thaliana
Length:	290 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|186510839, gi....

Description	E-value	Query Range	Subject Range
gi\|28807910, gi\|... - gi\|28899658\|ref\|NP_799263.1\| NifR3/Smm1 family protein [Vibrio parahaemolyticus RIMD 2210633], gi\|28... gi\|28807910 - gi\|28807910\|dbj\|BAC61147.1\| NifR3/Smm1 family protein [Vibrio parahaemolyticus RIMD 2210633]	251.0	[0..1]	[277..39]
DUSB_VIBPA - tRNA-dihydrouridine synthase B OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=du... DUSB_VIBPA - tRNA-dihydrouridine synthase B OS=Vibrio parahaemolyticus GN=dusB PE=3 SV=2	251.0	[0..1]	[277..30]
gi\|56552023, gi\|... - gi\|56552023\|ref\|YP_162862.1\| tRNA-dihydrouridine synthase [Zymomonas mobilis subsp. mobilis ZM4], gi...	250.0	[0..2]	[274..46]
gi\|116183599, gi... - gi\|75854117\|ref\|ZP_00761832.1\| COG0042: tRNA-dihydrouridine synthase [Vibrio sp. Ex25], gi\|116183599...	248.0	[0..1]	[277..14]
gi\|91228890, gi\|... - gi\|91228890\|ref\|ZP_01262792.1\| NifR3/Smm1 family protein [Vibrio alginolyticus 12G01], gi\|91187555\|g...	247.0	[0..1]	[277..30]
gi\|170717873, gi... - gi\|46156521\|ref\|ZP_00204726.1\| COG0042: tRNA-dihydrouridine synthase [Haemophilus somnus 2336], gi\|1...	245.0	[0..3]	[274..32]
gi\|83311464, gi\|... - gi\|83311464\|ref\|YP_421728.1\| NifR3-like protein [Magnetospirillum magneticum AMB-1], gi\|82946305\|dbj...	245.0	[0..2]	[275..9]
gi\|5834292 - gi\|5834292\|gb\|AAD53896.1\|AF176314_6 NifR3-like protein [Zymomonas mobilis] gi\|5834292\|gb\|AA... - NifR3-like protein [Zymomonas mobilis]	245.0	[0..2]	[266..46]
gi\|77958862 - gi\|77958862\|ref\|ZP_00822889.1\| COG0042: tRNA-dihydrouridine synthase [Yersinia bercovieri ATCC 43970...	245.0	[0..4]	[277..2]
gi\|88775590, gi\|... - gi\|88793018\|ref\|ZP_01108735.1\| tRNA-dihydrouridine synthase B [Alteromonas macleodii 'Deep ecotype']...	245.0	[0..2]	[282..31]

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Predicted Domain #1

Region A:
Residues: [1-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTPTQCSPS TVASGTSEFV EKGTDNVVFS TCDEEKSRVV FQMGTSDAVR ALKASEIVCN  60
   61 DVATIDINMG CPKAFSIQGG MGAALLSKPE LIHDILATLK RNLDVPVTCK IRLLKSPADT 120
  121 VELARRIEKL GVPALAVHGR KIADRPRDPA KWDEIADVVA ALSIPVIANG DVLEYDDFSR 180
  181 IKTATGAASV MVARGAMWNA SIFSPKGKSH WEDVKKKYLR KSILWNNDVK STKYTIKEMI 240
  241 AHHSCLELPE GKSINKADTL EDLARLYDLE DYFWTVKNIG PLTHNLNHVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.522879
Match:	1vhnA
Description:	Crystal structure of a putative flavin oxidoreductase with flavin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits