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View Structure Prediction Details

Protein: MTND2_ARATH
Organism: Arabidopsis thaliana
Length: 192 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MTND2_ARATH.

Description E-value Query
Range
Subject
Range
MTND3_ARATH - 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 OS=Arabidopsis thaliana GN=ARD3 PE=2 SV=1
304.0 [0..1] [188..1]

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Predicted Domain #1
Region A:
Residues: [1-192]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEAVKDGRE EVIQAWYMDD SEEDQRLPHH KDPKEFVSLD KLAELGVLSW RLDADNYETD  60
   61 EDLKKIRESR GYSYMDFCEV CPEKLPNYEV KVKSFFEEHL HTDEEIRYCV AGTGYFDVRD 120
  121 RNEAWIRVLV KKGGMIVLPA GIYHRFTVDS DNYIKAMRLF VGEPVWTPYN RPHDHLPARK 180
  181 EYVDNFMINA SA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.522879
Match: 1vr3A
Description: Crystal structure of Acireductone dioxygenase (13543033) from Mus musculus at 2.06 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.10919583483877 bayes_pls_golite062009
catalytic activity 0.401988496917198 bayes_pls_golite062009
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen 0.262317442423345 bayes_pls_golite062009
protein binding 0.133891883527478 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle