YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|28973445, gi\|...
Organism:	Arabidopsis thaliana
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28973445, gi|....

Description	E-value	Query Range	Subject Range
gi\|9758375 - gi\|9758375\|dbj\|BAB08824.1\| unnamed protein product [Arabidopsis thaliana]	138.0	[0..1]	[102..1]
gi\|38105096, gi\|... - gi\|39942156\|ref\|XP_360615.1\| hypothetical protein MG03158.4 [Magnaporthe grisea 70-15], gb\|EAA51563....	112.0	[0..10]	[84..3]
gi\|190406775 - gi\|190406775\|gb\|EDV10042.1\| mitochondrial ribosome small subunit component [Saccharomyces cerevisiae... gi\|151943492 - gi\|151943492\|gb\|EDN61803.1\| mitochondrial ribosomal small subunit component [Saccharomyces cerevisia... RSM27 - Mitochondrial ribosomal protein of the small subunit RT27_YEAST - Mitochondrial 37S ribosomal protein S27 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=...	109.0	[0..10]	[91..3]
gi\|42551236, gi\|... - gi\|46121647\|ref\|XP_385378.1\| hypothetical protein FG05202.1 [Gibberella zeae PH-1], gi\|42551236\|gb\|E...	108.0	[0..10]	[86..3]
gi\|44981265, gi\|... - gi\|45185547\|ref\|NP_983263.1\| ACL141Cp [Ashbya gossypii ATCC 10895], gi\|44981265\|gb\|AAS51087.1\| ACL14... gi\|44981265 - gi\|44981265\|gb\|AAS51087.1\| ACL141Cp [Ashbya gossypii ATCC 10895]	106.0	[0..10]	[91..20]
orf19.10807, orf... - orf19.3297 CGDID:CAL0003446 Assembly 19, Contig19-10173 (13056, 12748) CDS, reverse complemented, tr... gi\|238879395 - gi\|238879395\|gb\|EEQ43033.1\| conserved hypothetical protein [Candida albicans WO-1] gi\|68475007, gi\|... - gi\|68475544\|ref\|XP_718120.1\| potential mitochondrial ribosomal protein RSM27p [Candida albicans SC53...	103.0	[0..6]	[91..4]
gi\|125550842 - gi\|125550842\|gb\|EAY96551.1\| hypothetical protein OsI_18456 [Oryza sativa Indica Group] gi\|125592821, gi... - gi\|51038175\|gb\|AAT93978.1\| unknown protein [Oryza sativa Japonica Group], gi\|222630198\|gb\|EEE62330.1...	102.0	[0..4]	[102..6]
gi\|55241999, gi\|... - gi\|58382750\|ref\|XP_312147.2\| AGAP002777-PA [Anopheles gambiae str. PEST], gi\|55241999\|gb\|EAA07794.3\|... AGAP002777-PA - mRpS33: 28S ribosomal protein S33, mitochondrial\|protein_coding\|2R:27043420:27043755:1\|gene:AGAP0027...	101.0	[0..16]	[99..16]
gi\|49643810, gi\|... - gi\|50309337\|ref\|XP_454675.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643810\|emb\|CAG9976... gi\|49643810 - gi\|49643810\|emb\|CAG99762.1\| KLLA0E16127p [Kluyveromyces lactis]	100.0	[0..10]	[100..3]
mRpS33-PA - The gene mitochondrial ribosomal protein S33 is referred to in FlyBase by the symbol Dmel\mRpS33 (CG... gi\|220952128 - gi\|220952128\|gb\|ACL88607.1\| mRpS33-PA [synthetic construct]	100.0	[0..16]	[100..17]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGSLKSLI SSAVGRGVTE ARARIFGHML NPTGQRSPHK ILRKKLIGDK VAEWYPYDIK  60
   61 NEDPNVLARE EKERISKLEM LKRRDKGPPK KGHGKRAAKR NK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	41.721246
Match:	PF08293.2
Description:	No description for PF08293.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.729	N/A	N/A	a.118.8	TPR-like
View	Download	0.520	N/A	N/A	a.118.8	TPR-like
View	Download	0.520	N/A	N/A	a.118.8	TPR-like
View	Download	0.454	N/A	N/A	a.118.18	Cysteine rich protein B (HcpB)
View	Download	0.454	N/A	N/A	a.118.18	Cysteine rich protein B (HcpB)
View	Download	0.433	N/A	N/A	a.118.11	Cytochrome c oxidase subunit E
View	Download	0.406	N/A	N/A	a.118.11	Cytochrome c oxidase subunit E
View	Download	0.402	N/A	N/A	a.118.8	TPR-like
View	Download	0.308	N/A	N/A	a.118.8	TPR-like
View	Download	0.298	N/A	N/A	d.58.28	Peptide methionine sulfoxide reductase
View	Download	0.227	N/A	N/A	c.55.4	Translational machinery components

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits