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View Structure Prediction Details

Protein: LPAT1_ARATH
Organism: Arabidopsis thaliana
Length: 356 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LPAT1_ARATH.

Description E-value Query
Range
Subject
Range
LPAT1_BRANA - 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic OS=Brassica napus GN=LPAT1 PE=2 SV=1
283.0 [0..1] [356..1]

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Predicted Domain #1
Region A:
Residues: [1-158]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVASARSIS SHPSYYGKPI CSSQSSLIRI SRDKVCCFGR ISNGMTSFTT SLHAVPSEKF  60
   61 MGETRRTGIQ WSNRSLRHDP YRFLDKKSPR SSQLARDITV RADLSGAATP DSSFPEPEIK 120
  121 LSSRLRGIFF CVVAGISATF LIVLMIIGHP FVLLFDPY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [159-356]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRKFHHFIAK LWASISIYPF YKINIEGLEN LPSSDTPAVY VSNHQSFLDI YTLLSLGKSF  60
   61 KFISKTGIFV IPIIGWAMSM MGVVPLKRMD PRSQVDCLKR CMELLKKGAS VFFFPEGTRS 120
  121 KDGRLGSFKK GAFTVAAKTG VAVVPITLMG TGKIMPTGSE GILNHGNVRV IIHKPIHGSK 180
  181 ADVLCNEARS KIAESMDL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.045757
Match: 1iuqA
Description: The 1.55 A Crystal Structure of Glycerol-3-Phosphate Acyltransferase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle