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View Structure Prediction Details

Protein: C3H33_ARATH
Organism: Arabidopsis thaliana
Length: 397 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for C3H33_ARATH.

Description E-value Query
Range
Subject
Range
gi|11288371, gi|... - gi|4928917|gb|AAD33769.1|AF138743_1 zinc finger protein 1 [Arabidopsis thaliana], pir||T48874 zinc f...
224.0 [0..1] [393..1]

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Predicted Domain #1
Region A:
Residues: [1-128]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFNAGVPMS SLSPLMNQDA MWQMNLSSDE TMETGSYPER PGEPDCSYYI RTGLCRFGST  60
   61 CRFNHPRDRE LVIATARMRG EYPERIGQPE CEYYLKTGTC KFGVTCKFHH PRNKAGIAGR 120
  121 VSLNMLGY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.69897
Match: 2d9nA
Description: No description for 2d9nA was found.

Predicted Domain #2
Region A:
Residues: [129-268]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLRSNEVDCA YFLRTGHCKF GGTCKFNHPQ PQPTNMMVPT SGQQSYPWSR ASFIASPRWQ  60
   61 DPSSYASLIM PQGVVPVQGW NPYSGQLGSV SPSGTGNDQN YRNLQQNETI ESGSQSQGSF 120
  121 SGYNPGSSVP LGGYYALPRE 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.13
Match: 1pk8A
Description: Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [269-397]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVFPERPGQP ECQFYMKTGD CKFGTVCKFH HPRDRQAPPP DCLLSSIGLP LRPGEPLCVF  60
   61 YTRYGICKFG PSCKFDHPMR VFTYDNTASE TDEVVETSTG KSRRLSVSET RQAATTSSGK 120
  121 DTTIDNTQQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.522879
Match: 1rgoA
Description: Structural Basis for Recognition of the mRNA Class II AU-Rich Element by the Tandem Zinc Finger Domain of TIS11d
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle