YRC Public Data Repository - Protein Structure Prediction

Protein:	SRX_ARATH
Organism:	Arabidopsis thaliana
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRX_ARATH.

Description	E-value	Query Range	Subject Range
gi\|67087715, gi\|... - gi\|67153582\|ref\|ZP_00415327.1\| ParB-like partition protein [Azotobacter vinelandii AvOP], gi\|6708771... gi\|67153582, gi\|... - gi\|67153582\|ref\|ZP_00415327.1\| ParB-like partition protein [Azotobacter vinelandii AvOP], ref\|ZP_000...	122.0	[0..1]	[124..1]
gi\|115588934, gi... - gi\|53726896\|ref\|ZP_00140398.2\| COG1475: Predicted transcriptional regulators [Pseudomonas aeruginosa...	119.0	[0..1]	[124..1]
gi\|88796689, gi\|... - gi\|88796689\|ref\|ZP_01112346.1\| ParB family protein [Alteromonas macleodii 'Deep ecotype'], gi\|887719...	118.0	[0..1]	[124..1]
gi\|109900601, gi... - gi\|76793207\|ref\|ZP_00775697.1\| ParB-like partition protein [Pseudoalteromonas atlantica T6c], gi\|765...	118.0	[0..1]	[124..1]
gi\|150961051, gi... - gi\|94417271\|ref\|ZP_01297090.1\| hypothetical protein PaerP_01001070 [Pseudomonas aeruginosa PA7], gi\|...	118.0	[0..1]	[124..1]
gi\|218894665, gi... - gi\|218894665\|ref\|YP_002443535.1\| chromosome partitioning protein Spo0J [Pseudomonas aeruginosa LESB5... gi\|107104663 - gi\|107104663\|ref\|ZP_01368581.1\| hypothetical protein PaerPA_01005742 [Pseudomonas aeruginosa PACS2] gi\|11347575 - pir\|\|A82950 chromosome partitioning protein Spo0J PA5562 [imported] - Pseudomonas aeruginosa (strain... gi\|15600755, gi\|... - gi\|9951903\|gb\|AAG08947.1\|AE004968_1 chromosome partitioning protein Spo0J [Pseudomonas aeruginosa PA...	118.0	[0..1]	[124..1]
gi\|84324801, gi\|... - gi\|84324801\|ref\|ZP_00972855.1\| COG1475: Predicted transcriptional regulators [Pseudomonas aeruginosa...	118.0	[0..1]	[124..1]
gi\|68347805, gi\|... - gi\|70733506\|ref\|YP_263281.1\| chromosome partitioning protein ParB [Pseudomonas fluorescens Pf-5], gi...	117.0	[0..1]	[124..1]
gi\|95113429 - gi\|95113429\|emb\|CAK18157.1\| Chromosomal partitioning protein ParB [Pseudomonas entomophila L48] gi\|95113429, gi\|... - gi\|95113429\|emb\|CAK18157.1\| Chromosomal partitioning protein ParB [Pseudomonas entomophila L48], gi\|...	117.0	[0..1]	[124..1]
gi\|63259060, gi\|... - gi\|66048353\|ref\|YP_238194.1\| ParB-like partition protein [Pseudomonas syringae pv. syringae B728a], ...	117.0	[0..1]	[124..1]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANLMMRLPI SLRSFSVSAS SSNGSPPVIG GSSGGVGPMI VELPLEKIRR PLMRTRSNDQ  60
   61 NKVKELMDSI RQIGLQVPID VIEVDGTYYG FSGCHRYEAH QKLGLPTIRC KIRKGTKETL 120
  121 RHHLR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.09691
Match:	1vz0A
Description:	Chromosome segregation protein Spo0J from Thermus thermophilus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits