YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|145351239, gi...
Organism:	Arabidopsis thaliana
Length:	239 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|145351239, gi....

Description	E-value	Query Range	Subject Range
gi\|7485359, gi\|2... - pir\|\|T05401 hypothetical protein F10M6.90 - Arabidopsis thaliana, gi\|7270131\|emb\|CAB79945.1\| hypoth...	185.0	[0..1]	[239..191]
gi\|124486777, gi... - gi\|94378992\|ref\|XP_980874.1\| PREDICTED: similar to AN1, ubiquitin-like, homolog [Mus musculus], gi\|9...	161.0	[0..17]	[210..34]
gi\|109490442, gi... - gi\|109490442\|ref\|XP_001062061.1\| PREDICTED: similar to U11/U12 snRNP 25K protein [Rattus norvegicus]...	159.0	[0..3]	[127..127]
gi\|50749456 - gi\|50749456\|ref\|XP_421643.1\| PREDICTED: similar to AN1, ubiquitin-like, homolog [Gallus gallus]	159.0	[0..17]	[202..8]
gi\|76652541 - gi\|76652541\|ref\|XP_591219.2\| PREDICTED: chromosome 16 open reading frame 33 ortholog [Bos taurus]	159.0	[0..3]	[127..68]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVPPRRSLA ASLSPLRLID GLPRRRSFNY NQMPEEPIKL TVLKLDGSSF GIQVLKTATV  60
   61 GELKMAVEAA FSHLPISGPG KISWPHVWGQ FCLSYEDKRL INESEYLTEF GIKDGDQLRF 120
  121 IRHISNYCML MVKHKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	1v2yA
Description:	Solution Structure of Mouse Hypothetical Gene (RIKEN cDNA 3300001G02) Product Homologous to Ubiquitin Fold
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [137-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTPRVSSFKQ LKLFSTTPET RKKNVIREVE EDGVVDSIPR SQPSFLATVL GGLLSYKSTP  60
   61 SQRGTKYRNV TASRVFNKLI ARFRFKCNSE KDVWNRKKLI SET

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits