YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: MND1_ARATH
Organism: Arabidopsis thaliana
Length: 230 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MND1_ARATH.

Description E-value Query
Range
Subject
Range
gi|50746128 - gi|50746128|ref|XP_420365.1| PREDICTED: similar to tripartite motif-containing 2; tripartite motif p...
201.0 [0..1] [207..897]

Back

Predicted Domain #1
Region A:
Residues: [1-230]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKRGLSLE EKREKMLQIF YESQDFFLLK ELEKMGPKKG VISQSVKDVI QSLVDDDLVA  60
   61 KDKIGISIYF WSLPSCAGNQ LRSVRQKLES DLQGSNKRLA ELVDQCEALK KGREESEERT 120
  121 EALTQLKDIE KKHKDLKNEM VQFADNDPAT LEAKRNAIEV AHQSANRWTD NIFTLRQWCS 180
  181 NNFPQAKEQL EHLYTEAGIT EDFDYIELSS FPLSSSHEAD TAKQLVQDEA 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.522879
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle