YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: BET12_ARATH
Organism: Arabidopsis thaliana
Length: 130 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BET12_ARATH.

Description E-value Query
Range
Subject
Range
gi|109099266 - gi|109099266|ref|XP_001111568.1| PREDICTED: similar to syntaxin 2 isoform 2 [Macaca mulatta]
104.0 [0..5] [124..261]

Back

Predicted Domain #1
Region A:
Residues: [1-130]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFRRENRAS RTSLFDGLDG LEEGRLRASS SYAHDERDND EALENLQDRV SFLKRVTGDI  60
   61 HEEVENHNRL LDKVGNKMDS ARGIMSGTIN RFKLVFEKKS NRKSCKLIAY FVLLFLIMYY 120
  121 LIRLLNYIKG 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.39794
Match: 1dn1B
Description: Syntaxin 1A N-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle