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View Structure Prediction Details

Protein: HAT31_ARATH
Organism: Arabidopsis thaliana
Length: 723 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HAT31_ARATH.

Description E-value Query
Range
Subject
Range
HAT31_ARATH, HT3... - (Q04996) Homeobox protein HAT3.1, Homeobox protein HAT3.1 - Arabidopsis thaliana (Mouse-ear cress)
432.0 [0..63] [723..1]
gi|22830609 - gi|22830609|dbj|BAC15622.1| PHD-finger family homeodomain protein [Oryza sativa Japonica Group]
316.0 [0..118] [686..102]
gi|1143707, gi|1... - gi|162464040|ref|NP_001105549.1| Hox2b protein [Zea mays], gi|1143707|emb|CAA61910.1| Hox2b [Zea may...
282.0 [0..122] [714..336]
PRH_PETCR - Pathogenesis-related homeodomain protein OS=Petroselinum crispum GN=PRH PE=2 SV=1
236.0 [0..173] [703..486]

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Predicted Domain #1
Region A:
Residues: [1-82]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKAVSKRVT RSSGSGLKQT NVDNGGEISP TVDRVSEQGK SSEAGSHMPT DANGNGHLHH  60
   61 EIMDHGKGNE EQKPTPQTVK KD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.371 a.77.1 DEATH domain
View Download 0.371 a.77.1 DEATH domain
View Download 0.261 a.60.8 HRDC-like
View Download 0.254 a.28.1 ACP-like
View Download 0.251 a.28.1 ACP-like
View Download 0.251 a.28.1 ACP-like
View Download 0.236 d.15.1 Ubiquitin-like
View Download 0.202 a.28.1 ACP-like
View Download 0.201 a.4.5 "Winged helix" DNA-binding domain

Predicted Domain #2
Region A:
Residues: [83-212]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNTNTKFSGS HRELVIGLPC RGQFEIHNRS RASTSSKRLG GGGERNVLFA SHKRAQRSKE  60
   61 DAGPSSVVAN STPVGRPKKK NKTMNKGQVR EDDEYTRIKK KLRYFLNRIN YEQSLIDAYS 120
  121 LEGWKGSSLE 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.326 N/A N/A a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like
View Download 0.326 N/A N/A a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like
View Download 0.208 N/A N/A a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like

Predicted Domain #3
Region A:
Residues: [213-337]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KIRPEKELER ATKEILRRKL KIRDLFQHLD TLCAEGSLPE SLFDTDGEIS SEDIFCAKCG  60
   61 SKDLSVDNDI ILCDGFCDRG FHQYCLEPPL RKEDIPPDDE GWLCPGCDCK DDSLDLLNDS 120
  121 LGTKF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.39794
Match: 2ysmA
Description: No description for 2ysmA was found.

Predicted Domain #4
Region A:
Residues: [338-408]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVSDSWEKIF PEAAAALVGG GQNLDCDLPS DDSDDEEYDP DCLNDNENDE DGSDDNEESE  60
   61 NEDGSSDETE F

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [409-595]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSASDEMIES FKEGKDIMKD VMALPSDDSE DDDYDPDAPT CDDDKESSNS DCTSDTEDLE  60
   61 TSFKGDETNQ QAEDTPLEDP GRQTSQLQGD AILESDVGLD DGPAGVSRRR NVERLDYKKL 120
  121 YDEEYDNVPT SSSDDDDWDK TARMGKEDSE SEDEGDTVPL KQSSNAEDHT SKKLIRKSKR 180
  181 ADKKDTL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [596-723]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EMPQEGPGEN GGSGEIEKSS SSACKQTDPK TQRLYISFQE NQYPDKATKE SLAKELQMTV  60
   61 KQVNNWFKHR RWSINSKPLV SEENVEKLKT GKEGECETSV AGSSKQTMET ESVAEKPTNT 120
  121 GSRKRRRK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.522879
Match: 1b8iA
Description: Ultrabithorax (ubx) homeodomain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle