| Protein: | gi|4581205, gi|9... |
| Organism: | Arabidopsis thaliana |
| Length: | 710 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|4581205, gi|9....
| Description | E-value | Query Range |
Subject Range |
|
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465.0 | [0..1] | [710..1] |
|
|
411.0 | [0..1] | [710..11] |
|
|
401.0 | [0..1] | [710..12] |
|
|
393.0 | [0..1] | [710..1] |
|
Region A: Residues: [1-78] |
1 11 21 31 41 51
| | | | | |
1 MAGKRENFVR LPSSSVAFQQ NYASNFSGQL HPIHASNETS RSFKKGIQKG SKGLKSIGRS 60
61 LGFGVYRAVF PEDLKVSE
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [79-488] |
1 11 21 31 41 51
| | | | | |
1 KKIFDPQDKF LLYCNKLFVA SCILSVFVDP FFFYLPVINA ESKCLGIDRK LAITASTLRT 60
61 FIDVFYLAHM ALQLRTAYIA PSSRVFGRGE LVIDPAQIAK RYLQRWFIID FLSVLPLPQI 120
121 VVWRFLQSSN GSDVLATKQA LLFIVLVQYI PRFLRVLPLT SELKRTAGVF AETAWAGAAY 180
181 YLLLYMLASH IVGAFWYLLA LERNDACWQE ACIDAGNCST DFLYCGNQNM DGYAVWNRAK 240
241 ESVLKSKCRA DLDDNNPPFD FGIYTQALSS GIVSSQNFIV KYCYCLWWGL QNLSTLGQGL 300
301 ETSTYPMEII FSISLAISGL ILFALLIGNM QTYLQSLTIR LEEMRVKRRD SEQWMHHRML 360
361 PQDLRERVRR YDQYKWLETR GVDEEYLVQN LPKDLRRDIK RHLCLALVRR
|
| Detection Method: | |
| Confidence: | 48.221849 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [489-622] |
1 11 21 31 41 51
| | | | | |
1 VPLFKSMDDK LLDAICMRLK PCLFTESTYL VREGDPVDEM LFIIRGRLES VTTDGGRSGF 60
61 FNRSLLKEGE FCGEELLTWA LDPKSGVNLP SSTRTVKALT EVEAFALTSE ELKFVASQFR 120
121 RLHSRQVQHT FRFY
|
| Detection Method: | |
| Confidence: | 11.69897 |
| Match: | 1wgpA |
| Description: | Solution structure of the cNMP-binding domain from Arabidopsis thaliana cyclic nucleotide-regulated ion channel |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [623-710] |
1 11 21 31 41 51
| | | | | |
1 SHQWRTWAAC FIQAAWRRYC KRKKMEEAEA EAAAVSSSTA GPSYSIGAAF LATKFAANAL 60
61 RTIHRNRNTK IRDLVKLQKP PEPDFTAD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.915 | a.8.9 | Description not found. |
