YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|241909490, gi...
Organism:	Desulfovibrio vulgaris RCH1
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|241909490, gi....

Description	E-value	Query Range	Subject Range
gi\|168826957, gi... - gi\|32029862\|ref\|ZP_00132816.1\| COG5005: Mu-like prophage protein gpG [Haemophilus somnus 2336], gi\|1...	159.0	[0..1]	[159..1]
gi\|11353451, gi\|... - gi\|6900375\|emb\|CAB71987.1\| hypothetical protein [Neisseria meningitidis], pir\|\|D81811 hypothetical p... gi\|218768620, gi... - gi\|7380486\|emb\|CAB85072.1\| hypothetical protein [Neisseria meningitidis Z2491], gi\|218768620\|ref\|YP_...	154.0	[0..1]	[161..1]
gi\|33152600, gi\|... - gi\|33152600\|ref\|NP_873953.1\| bacteriophage Mu G-like protein [Haemophilus ducreyi 35000HP], gi\|33148...	151.0	[0..2]	[159..4]
SO0669 - prophage MuSo1 G protein, putative gi\|24346184, gi\|... - gi\|24372260\|ref\|NP_716302.1\| prophage MuSo1, virion morphogenesis protein [Shewanella oneidensis MR-...	149.0	[0..2]	[156..4]
VPG2_HAEIN - Mu-like prophage FluMu G protein 2 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 /... VPG2_HAEIN - Mu-like prophage FluMu G protein 2 OS=Haemophilus influenzae GN=HI_1568 PE=4 SV=1	149.0	[0..1]	[159..1]
gi\|57904722 - gi\|57904722\|gb\|AAW58967.1\| G protein [Cloning vector MuNXKan] GPG_BPMU - Putative capsid assembly protein G OS=Enterobacteria phage Mu GN=G PE=2 SV=1	146.0	[0..2]	[159..5]
gi\|194430108, gi... - gi\|75208648\|ref\|ZP_00708952.1\| COG5005: Mu-like prophage protein gpG [Escherichia coli B171], gi\|194...	145.0	[0..2]	[159..5]
gi\|188488747, gi... - gi\|75513091\|ref\|ZP_00735553.1\| COG5005: Mu-like prophage protein gpG [Escherichia coli 53638], gi\|18...	144.0	[0..2]	[159..5]
gi\|134295414, gi... - gi\|67545321\|ref\|ZP_00423244.1\| Phage virion morphogenesis (putative tail completion) protein [Burkho...	144.0	[0..1]	[159..2]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEIEVNTEA IEEGLQRLAA LGRDLTPVAR ALGGVMADAA ERAFAGQCDP VTGAAWHPLS  60
   61 PVTLARRAKG GHDGPILQVR GILASSIHTD YGRDHVTVGT NEPHARTHQF GAMRGAHGRT 120
  121 RRGGPIPWGN IPARPFLGVG PDDEEEIEGI VRAEVQKAFF GV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	22.769551
Match:	PF05069.4
Description:	No description for PF05069.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits