YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|241909539, gi...
Organism:	Desulfovibrio vulgaris RCH1
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|241909539, gi....

Description	E-value	Query Range	Subject Range
gi\|94731432, gi\|... - gi\|94987183\|ref\|YP_595116.1\| flagellar basal body rod protein FlgG [Lawsonia intracellularis PHE/MN1...	1.0E-70	[1..260]	[1..260]
gi\|4982109, gi\|1... - gi\|4982109\|gb\|AAD36609.1\|AE001800_19 flagellar basal-body rod protein FlgG [Thermotoga maritima MSB8... gi\|7443089 - pir\|\|B72243 flagellar basal-body rod protein FlgG - Thermotoga maritima (strain MSB8) gi\|119886237, gi... - gi\|148270380\|ref\|YP_001244840.1\| flagellar basal-body rod protein FlgG [Thermotoga petrophila RKU-1]...	7.0E-70	[1..260]	[1..261]
gi\|89211345, gi\|... - gi\|89211345\|ref\|ZP_01189714.1\| Protein of unknown function DUF1078 [Halothermothrix orenii H 168], g...	1.0E-68	[1..260]	[1..262]
gi\|78220603, gi\|... - gi\|78358198\|ref\|YP_389647.1\| flagellar basal body rod protein FlgG [Desulfovibrio desulfuricans subs...	2.0E-68	[1..260]	[1..260]
gi\|189018758, gi... - gi\|189026183\|ref\|YP_001933955.1\| flagellar basal-body rod protein [Treponema pallidum subsp. pallidu... gi\|15639944, gi\|... - gi\|3323281\|gb\|AAC65915.1\| flagellar basal-body rod protein (flgG-1) [Treponema pallidum subsp. palli... gi\|7443084 - pir\|\|C71259 probable flagellar basal-body rod protein (flgG-1) - syphilis spirochete	2.0E-68	[1..260]	[1..264]
gi\|7443088 - pir\|\|C70372 flagellar hook basal body protein flgG - Aquifex aeolicus gi\|15606190, gi\|... - gi\|2983377\|gb\|AAC06963.1\| flagellar hook basal-body protein FlgG [Aquifex aeolicus VF5], gi\|15606190...	5.0E-68	[1..260]	[1..262]
gi\|71484066, gi\|... - gi\|71550721\|ref\|ZP_00670810.1\| Flagellar basal body rod protein:Protein of unknown function DUF1078 ...	7.0E-68	[1..258]	[1..260]
gi\|67677244, gi\|... - gi\|92114096\|ref\|YP_574024.1\| flagellar basal-body rod FlgG [Chromohalobacter salexigens DSM 3043], g...	2.0E-67	[1..258]	[1..260]
gi\|30138210, gi\|... - gi\|30248324\|ref\|NP_840394.1\| flagellar basal body rod protein FlgG [Nitrosomonas europaea ATCC 19718...	1.0E-66	[1..258]	[1..260]
gi\|82410520, gi\|... - gi\|82702455\|ref\|YP_412021.1\| hypothetical protein Nmul_A1326 [Nitrosospira multiformis ATCC 25196], ...	3.0E-66	[1..258]	[1..260]

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Predicted Domain #1

Region A:
Residues: [1-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRSLWTAAT GMVAQQLNID VISHNLANVN TSGFKKSRAE FEDLMYQNMR IAGSATEGDS  60
   61 RIPVGIQVGM GVRPTAVHKF FSQGDFQNSG NPLDIAIEGD GFFQVLVNGE PRYTRAGAFK 120
  121 LNQDGTVVTA NGYVLQPEFT VPAETKNVVV TEAGHIAALD ANGQELAAAD IPLYTFINPA 180
  181 GLDAIGRNLY VPSEASGEAV EGVPGEDNVG TLAQGFLEMS NVEVVDEMVN MIVGQRAYEM 240
  241 NSKAISTSDQ MLQTAVNLKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.154902
Match:	1wlgA
Description:	Crystal structure of FlgE31, a major fragment of the hook protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits