YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229269099, gi...
Organism:	Bacillus anthracis str. A0248
Length:	300 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229269099, gi....

Description	E-value	Query Range	Subject Range
gi\|91191158, gi\|... - gi\|91224247\|ref\|ZP_01259510.1\| putative transcription regulator protein [Vibrio alginolyticus 12G01]...	3.0E-72	[9..296]	[7..293]
gi\|28900071, gi\|... - gi\|28900071\|ref\|NP_799726.1\| putative transcription regulator protein [Vibrio parahaemolyticus RIMD ... gi\|28808354 - gi\|28808354\|dbj\|BAC61559.1\| putative transcription regulator protein [Vibrio parahaemolyticus RIMD 2...	1.0E-71	[9..296]	[7..293]
gi\|116185384, gi... - gi\|75856032\|ref\|ZP_00763668.1\| COG0583: Transcriptional regulator [Vibrio sp. Ex25], gi\|254227935\|re...	1.0E-71	[9..296]	[7..293]
gi\|228901018, gi... - gi\|228901018\|ref\|ZP_04065229.1\| Transcriptional regulator, LysR [Bacillus thuringiensis IBL 4222], g... gi\|218541706, gi... - gi\|218897372\|ref\|YP_002445783.1\| transcriptional regulator, LysR family [Bacillus cereus G9842], gi\|... gi\|228965395, gi... - gi\|228965395\|ref\|ZP_04126485.1\| Transcriptional regulator, LysR [Bacillus thuringiensis serovar sott... gi\|74491626, gi\|... - gi\|75760891\|ref\|ZP_00740903.1\| Transcriptional regulators, LysR family [Bacillus thuringiensis serov...	3.0E-71	[1..300]	[1..300]
gi\|229127805, gi... - gi\|229127805\|ref\|ZP_04256791.1\| Transcriptional regulator, LysR [Bacillus cereus BDRD-Cer4], gi\|2286... gi\|30020498, gi\|... - gi\|30020498\|ref\|NP_832129.1\| LysR family transcriptional regulator [Bacillus cereus ATCC 14579], gi\|...	9.0E-71	[1..300]	[1..300]
gi\|47570132, gi\|... - gi\|47570132\|ref\|ZP_00240789.1\| transcription regulator LysR family VC1617, putative [Bacillus cereus...	5.0E-70	[1..300]	[1..300]
gi\|27367995, gi\|... - gi\|27367995\|ref\|NP_763522.1\| transcriptional regulator [Vibrio vulnificus CMCP6], gi\|27359568\|gb\|AAO...	6.0E-70	[2..297]	[1..295]
gi\|37200667, gi\|... - gi\|37676126\|ref\|NP_936522.1\| transcriptional regulator [Vibrio vulnificus YJ016], gi\|37200667\|dbj\|BA...	1.0E-69	[2..297]	[1..295]
gi\|49329257, gi\|... - gi\|49477701\|ref\|YP_036558.1\| LysR family transcriptional regulator [Bacillus thuringiensis serovar k...	1.0E-69	[1..300]	[1..300]
gi\|114045851, gi... - gi\|78689367\|ref\|ZP_00854030.1\| transcriptional regulator, LysR family [Shewanella sp. MR-7], gi\|7851...	1.0E-69	[1..297]	[1..294]

Back

Predicted Domain #1

Region A:
Residues: [1-300]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQIELRQLE YFLAVSKELH FTKAAEKLNI SQPSLSQQIR SLEHEVGMPL FDRIGKKISL  60
   61 TEAGRILLLH SKTIFHEIEQ ARSAIQDLNG LQQGSLTIGS LLTVVNYLLP PAILNFNNLY 120
  121 PNIELSVLGL RTGDIREKLL QNELDIGITF LPVQDKEIIS APLYESELII VVPTGHQLAK 180
  181 HNHVSIAELQ NYPLILLPKN FFLTELITSH CQKFNFKPKP ILEISTMESL IQMVSKGMGI 240
  241 TVLPKPYIDF LQNKNIQAIK IENPTPTIEI GLIYRKDKYM CAATREFIKQ LKLTVHSLQN 300
  301

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.39794
Match:	2h99A
Description:	No description for 2h99A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits