YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254761139
Organism:	Bacillus anthracis str. Australia 94
Length:	776 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254761139.

Description	E-value	Query Range	Subject Range
gi\|67853729, gi\|... - gi\|67924417\|ref\|ZP_00517844.1\| Hydrogenase maturation protein HypF [Crocosphaera watsonii WH 8501], ...	0.0	[4..771]	[1..768]
gi\|7449699 - pir\|\|B70359 transcription regulator HypF - Aquifex aeolicus gi\|2983269, gi\|1... - gi\|2983269\|gb\|AAC06863.1\| transcriptional regulatory protein HypF [Aquifex aeolicus VF5], gi\|1560608...	0.0	[5..767]	[1..743]
gi\|17130039, gi\|... - gi\|17228189\|ref\|NP_484737.1\| hydrogenase maturation protein [Nostoc sp. PCC 7120], gi\|17130039\|dbj\|B... gi\|25324741 - pir\|\|AD1893 hydrogenase maturation protein [imported] - Nostoc sp. (strain PCC 7120)	0.0	[7..773]	[1..785]
gi\|21674611, gi\|... - gi\|21674611\|ref\|NP_662676.1\| hydrogenase maturation protein HypF [Chlorobium tepidum TLS], gi\|216478...	0.0	[6..771]	[15..766]
gi\|75910798, gi\|... - gi\|75910798\|ref\|YP_325094.1\| hydrogenase maturation protein HypF [Anabaena variabilis ATCC 29413], g...	0.0	[7..773]	[1..785]
gi\|48846523, gi\|... - gi\|78221346\|ref\|YP_383093.1\| hydrogenase maturation protein HypF [Geobacter metallireducens GS-15], ...	0.0	[8..774]	[5..760]
gi\|20806660 - gi\|20806660\|ref\|NP_621831.1\| Hydrogenase maturation factor [Thermoanaerobacter tengcongensis MB4] gi\|20515109, gi\|... - gi\|20806660\|ref\|NP_621831.1\| hydrogenase maturation factor [Thermoanaerobacter tengcongensis MB4], g...	0.0	[6..766]	[8..745]
gi\|22652029 - gi\|22652029\|gb\|AAN03573.1\|AF381045_10 hydrogenase maturation protein HypF [Synechococcus sp. PCC 700...	0.0	[8..766]	[5..761]
gi\|30021351, gi\|... - gi\|30021351\|ref\|NP_832982.1\| hydrogenase maturation protein hypF [Bacillus cereus ATCC 14579], gi\|29... gi\|229128520, gi... - gi\|229128520\|ref\|ZP_04257498.1\| Hydrogenase maturation protein [Bacillus cereus BDRD-Cer4], gi\|22865...	0.0	[1..700]	[1..700]
gi\|39982178, gi\|... - gi\|39995415\|ref\|NP_951366.1\| hydrogenase maturation protein HypF [Geobacter sulfurreducens PCA], gi\|...	0.0	[9..766]	[4..750]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKVINMFIK KYQVKGIVQG VGFRPFVYRI AKKYHLNGWV LNDSNGVLIE VEGEQNNISH  60
   61 FIHDIEFNSP ELAYVQEVKL IEEQESNNRY SSFDILS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.0
Match:	1v3zA
Description:	Crystal Structure of Acylphosphatase from Pyrococcus horikoshii
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.52035558898316	bayes_pls_golite062009
hydrolase activity	0.582382488349249	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [98-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQKHSSRQTL ISPDTYVCNE CLEELFDPTN RRFRYPFINC TNCGPRYSII KDIPYDRPYT  60
   61 TMSKFPMCKE CDIEYKDILD RRFHAQPNAC WKCG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.34
Match:	2i13A
Description:	No description for 2i13A was found.

Predicted Domain #3

Region A:
Residues: [192-437]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQVQLKTTDG TNVSTDNPIE KTIDLLKKGK ILAIKGLGGY HLVVDPMNHE AVKELRKRKK  60
   61 RDEKPFALMS SQLDDVKNFA EITKNEETLL VSKERPIVLL NKKDNEYISS DVASSNNTYG 120
  121 VMLAYTPLHH LILRGNFISL IATSANVSDE PIVYKDGDAI EQLKGIADYY LVHNREIFTR 180
  181 VDDSIVRGID LDDEVIKLQI IRRARGYVPN PIDFKEGSPN VLALGAELKN TICLTKGEKA 240
  241 FISHHI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.154902
Match:	1k7jA
Description:	Hypothetical protein YciO
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.71407687320205	bayes_pls_golite062009

Predicted Domain #4

Region A:
Residues: [438-776]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDLKNYKIYE SFKNTIAHLQ KIFEISPSVI ASDLHPDFYS TKYAFDQNVL PVVQVQHHHA  60
   61 HMASCMVDNQ LDGPVLGVIL DGTGYGDDGN IWGGEFLIGD FLNYERAAYI DYFQLPGGDK 120
  121 AVKEPYRIAL GILTQIYGEQ VKELPIKIIS ERNSFELDVL IKMIQKGINS PLTSSMGRLF 180
  181 DAVSALLGVC ETVQYEGQAA IELEQAIDIN NSSNPLLSYE IVASNGIRKI DIKPMFKELV 240
  241 SLILKDKYTK GELSYRFHYT MVQMITETCK QIRQETGINK LVLSGGVFLN KFLLVETYKS 300
  301 LKACKFEVYM HKQVPTNDGG ISLGQAAIAA HRYKDMHSV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.522879
Match:	2ivnA
Description:	No description for 2ivnA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: