YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|227816343, gi...
Organism:	Bacillus anthracis str. CDC 684
Length:	551 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|227816343, gi....

Description	E-value	Query Range	Subject Range
gi\|30018962, gi\|... - gi\|30018962\|ref\|NP_830593.1\| Sodium-dependent phosphate transporter [Bacillus cereus ATCC 14579], gi... gi\|229108389, gi... - gi\|229108389\|ref\|ZP_04238006.1\| Na/Pi-cotransporter II-related protein [Bacillus cereus Rock1-15], g...	0.0	[1..551]	[1..551]
gi\|51978010, gi\|... - gi\|52144541\|ref\|YP_082287.1\| sodium-dependent phosphate transporter [Bacillus cereus E33L], gi\|51978...	0.0	[1..551]	[1..551]
gi\|49331855, gi\|... - gi\|49480299\|ref\|YP_035041.1\| sodium-dependent phosphate transporter [Bacillus thuringiensis serovar ...	0.0	[1..551]	[1..551]
gi\|42779954, gi\|... - gi\|42779954\|ref\|NP_977201.1\| Na/Pi-cotransporter family protein [Bacillus cereus ATCC 10987], gi\|427...	0.0	[8..551]	[1..544]
gi\|47564720, gi\|... - gi\|47564720\|ref\|ZP_00235764.1\| sodium-dependent phosphate transporter [Bacillus cereus G9241], gi\|47...	0.0	[8..551]	[1..544]
gi\|89151560, gi\|... - gi\|89200489\|ref\|ZP_01179242.1\| Na/Pi cotransporter II-related [Bacillus cereus subsp. cytotoxis NVH ...	0.0	[1..551]	[1..551]
gi\|25513885, gi\|... - pir\|\|AB1178 transport protein homolog lmo0826 [imported] - Listeria monocytogenes (strain EGD-e), gi... gi\|224501871 - gi\|224501871\|ref\|ZP_03670178.1\| hypothetical protein LmonFR_05052 [Listeria monocytogenes FSL R2-561... gi\|16802868 - gi\|16802868\|ref\|NP_464353.1\| hypothetical protein lmo0826 [Listeria monocytogenes EGD-e]	0.0	[2..543]	[3..544]
gi\|47016716, gi\|... - gi\|47094834\|ref\|ZP_00232448.1\| Na/Pi-cotransporter family protein [Listeria monocytogenes str. 1/2a ... gi\|126941917, gi... - gi\|254899000\|ref\|ZP_05258924.1\| hypothetical protein LmonJ_04265 [Listeria monocytogenes J0161], gi\|... gi\|127766160, gi... - gi\|254911512\|ref\|ZP_05261524.1\| hypothetical protein LmonJ2_01860 [Listeria monocytogenes J2818], gi... gi\|153178911, gi... - gi\|254935838\|ref\|ZP_05267535.1\| hypothetical protein LmonF6_01865 [Listeria monocytogenes F6900], gi...	0.0	[2..543]	[3..544]
gi\|46880325, gi\|... - gi\|46907059\|ref\|YP_013448.1\| Na/Pi-cotransporter family protein [Listeria monocytogenes str. 4b F236...	0.0	[2..543]	[3..544]
gi\|23099388, gi\|... - gi\|23099388\|ref\|NP_692854.1\| hypothetical protein OB1933 [Oceanobacillus iheyensis HTE831], gi\|22777...	0.0	[1..539]	[1..539]

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Predicted Domain #1

Region A:
Residues: [1-174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYNVQDMIF QFIGGLGIFL FGIKYMGDGL QQAAGDRLRD ILDRFTTNPL MGVLAGMLVT  60
   61 VLIQSSSGTT ALTVGLVSAG FMTLRQAIGV IMGANIGTTV TAFIIGIKIG EYALPIMAVG 120
  121 AILLFFFKNK KVHSLGQVIF GFGMLFFGLE LMSTGMKPLR SLESFQELTV SMSD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	77.537602
Match:	PF02690.6
Description:	No description for PF02690.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [175-320]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPILGIVVGT VFTLIVQSSS ATIGILQELF GQGAIDLQAA LPVLFGDNIG TTITAVLAAI  60
   61 GTSIAARRAA LVHVIFNIVG TIIFTILLIP FTNLIQYFQT SLNLNPEMTI AFAHGTFNVT 120
  121 NTIIQFPFIA VLAWIVTKII RGEDAA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [321-551]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IDFKPQHLNP IFIEQSPAIA LTEAQKEIIR MAEFSLHGLK EANQFLNTQD KKHVDMATQL  60
   61 EGAINNLDKK ITEYLVLLSE KPLSPTDSEK HSVLAGVVGD IERVGDHVEN LVELVDFQIS 120
  121 NRVSLSNEAL AELNEMLELT ISTLQDAINA LTNFDTELAQ TVIAKERKID QMERVLRKRH 180
  181 VLRLNERSCS GDASIIYVDM VSNLERIGDH AVNIADGVLG EQGKINLKQS L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.045757
Match:	1t72A
Description:	Crystal structure of phosphate transport system protein phoU from Aquifex aeolicus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.0245585158032	bayes_pls_golite062009
protein binding	0.0825871089137892	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: