YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|225786012, gi...
Organism:	Bacillus cereus 03BB102
Length:	279 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|225786012, gi....

Description	E-value	Query Range	Subject Range
gi\|228799208, gi... - gi\|228960444\|ref\|ZP_04122095.1\| hypothetical protein bthur0005_39110 [Bacillus thuringiensis serovar... gi\|29897815, gi\|... - gi\|30022258\|ref\|NP_833889.1\| hemolysin A [Bacillus cereus ATCC 14579], gi\|29897815\|gb\|AAP11090.1\| pu... gi\|229152378, gi... - gi\|229152378\|ref\|ZP_04280570.1\| hypothetical protein bcere0011_39160 [Bacillus cereus m1550], gi\|228... gi\|229129456, gi... - gi\|229129456\|ref\|ZP_04258427.1\| hypothetical protein bcere0015_38990 [Bacillus cereus BDRD-Cer4], gi... gi\|228671786, gi... - gi\|229111651\|ref\|ZP_04241201.1\| hypothetical protein bcere0018_38950 [Bacillus cereus Rock1-15], gi\|... gi\|228723329, gi... - gi\|229047872\|ref\|ZP_04193448.1\| hypothetical protein bcere0027_38470 [Bacillus cereus AH676], gi\|228... gi\|218161357, gi... - gi\|218233400\|ref\|YP_002368979.1\| hemolysin A [Bacillus cereus B4264], gi\|218161357\|gb\|ACK61349.1\| he...	5.0E-64	[1..279]	[1..279]
gi\|49480918, gi\|... - gi\|49480918\|ref\|YP_038237.1\| hemolysin A [Bacillus thuringiensis serovar konkukian str. 97-27], gi\|4...	6.0E-64	[1..279]	[1..279]
gi\|228648500, gi... - gi\|229134998\|ref\|ZP_04263804.1\| hypothetical protein bcere0014_39050 [Bacillus cereus BDRD-ST196], g... gi\|228747806, gi... - gi\|229013394\|ref\|ZP_04170531.1\| hypothetical protein bmyco0001_38060 [Bacillus mycoides DSM 2048], g... gi\|163941934, gi... - gi\|89207016\|ref\|ZP_01185565.1\| Hemolysin A [Bacillus weihenstephanensis KBAB4], gi\|89155045\|gb\|EAR75... gi\|228614512, gi... - gi\|229168920\|ref\|ZP_04296637.1\| hypothetical protein bcere0007_38730 [Bacillus cereus AH621], gi\|228...	9.0E-64	[1..279]	[1..279]
gi\|65321561, gi\|... - gi\|65321561\|ref\|ZP_00394520.1\| COG1189: Predicted rRNA methylase [Bacillus anthracis str. A2012], re...	1.0E-63	[1..279]	[1..279]
gi\|42783294, gi\|... - gi\|42783294\|ref\|NP_980541.1\| hemolysin A [Bacillus cereus ATCC 10987], gi\|42739222\|gb\|AAS43149.1\| he...	2.0E-63	[1..279]	[1..279]
gi\|254852586 - gi\|254852586\|ref\|ZP_05241934.1\| hypothetical protein LmonoFSL_04521 [Listeria monocytogenes FSL R2-5... gi\|254824575 - gi\|254824575\|ref\|ZP_05229576.1\| hypothetical protein LmonFS_05389 [Listeria monocytogenes FSL J1-194... gi\|254993061 - gi\|254993061\|ref\|ZP_05275251.1\| hypothetical protein LmonocytoFSL_08501 [Listeria monocytogenes FSL ... gi\|254880564 - gi\|254880564\|ref\|ZP_05253274.1\| hypothetical protein LmonFSL_15293 [Listeria monocytogenes FSL J2-07... gi\|153166753, gi... - gi\|153166753\|ref\|ZP_01927257.1\| hemolysin A [Listeria monocytogenes FSL N1-017], gi\|133727377\|gb\|EBA... gi\|153202205, gi... - gi\|254932319\|ref\|ZP_05265678.1\| hypothetical protein LmonH_07808 [Listeria monocytogenes HPB2262], g... gi\|46907592, gi\|... - gi\|46907592\|ref\|YP_013981.1\| hemolysin A [Listeria monocytogenes str. 4b F2365], gi\|46880860\|gb\|AAT0... gi\|47093753, gi\|... - gi\|47093753\|ref\|ZP_00231503.1\| hemolysin A [Listeria monocytogenes str. 4b H7858], gi\|47017874\|gb\|EA... gi\|225876429, gi... - gi\|226223967\|ref\|YP_002758074.1\| hypothetical protein Lm4b_01375 [Listeria monocytogenes Clip81459],...	3.0E-62	[1..274]	[1..274]
gi\|152976580, gi... - gi\|89200813\|ref\|ZP_01179563.1\| Hemolysin A [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|8915119...	3.0E-62	[1..279]	[1..279]
gi\|16410782, gi\|... - pir\|\|AF1245 conserved hypothetical protein lmo1366 [imported] - Listeria monocytogenes (strain EGD-e... gi\|224501691 - gi\|224501691\|ref\|ZP_03669998.1\| hypothetical protein LmonFR_04112 [Listeria monocytogenes FSL R2-561... gi\|254936367 - gi\|254936367\|ref\|ZP_05268064.1\| hypothetical protein LmonF6_04520 [Listeria monocytogenes F6900] gi\|126943378, gi... - gi\|254898469\|ref\|ZP_05258393.1\| hypothetical protein LmonJ_01600 [Listeria monocytogenes J0161], gi\|... gi\|153190762, gi... - gi\|254912040\|ref\|ZP_05262052.1\| hypothetical protein LmonJ2_04530 [Listeria monocytogenes J2818], gi... gi\|254827627, gi... - gi\|254827627\|ref\|ZP_05232314.1\| hypothetical protein LmonocytogeFSL_04135 [Listeria monocytogenes FS... gi\|47015695, gi\|... - gi\|47095949\|ref\|ZP_00233552.1\| hemolysin A [Listeria monocytogenes str. 1/2a F6854], gi\|47015695\|gb\|... gi\|16803406 - gi\|16803406\|ref\|NP_464891.1\| hypothetical protein lmo1366 [Listeria monocytogenes EGD-e]	4.0E-62	[1..274]	[1..274]
gi\|89099258, gi\|... - gi\|89099258\|ref\|ZP_01172136.1\| putative cell adhesion protein (contact hemolysin TlyA-related) [Baci...	6.0E-62	[1..279]	[1..279]
gi\|52786335, gi\|... - gi\|52786335\|ref\|YP_092164.1\| YqxC [Bacillus licheniformis ATCC 14580], gi\|52348837\|gb\|AAU41471.1\| Yq...	4.0E-61	[1..275]	[1..275]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKKERVDV LLVERGLIET REKAKRAIMA GLVYANEMRL DKPGEKIPQD TEITVKGQVM  60
   61 PYVSRGGYKL EKALETFHLD L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.154902
Match:	1c05A
Description:	Ribosomal protein S4
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [82-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QDKVMIDIGS STGGFTDCAL QNGAKLSYAL DVGYNQLAWK LRQDERVVVM ERTNFRYVTP  60
   61 ADLERGLPQF ASIDVSFISL KLILPVLKTM LMPNGDVAAL IKPQFEAGRE QVGKKGIVRD 120
  121 RKVHEAVVEM IVDFAIKEGY DVEGLTFSPI TGGDGNIEFL IHLKWHGERE NGENHSPVSV 180
  181 EQVVTEAHDV LKQKGKGE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.221849
Match:	1xxlA
Description:	The crystal structure of YcgJ protein from Bacillus subitilis at 2.1 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methyltransferase activity	4.64500705012502	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.57389022626587	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	3.74830027382001	bayes_pls_golite062009
RNA methyltransferase activity	3.6174490060285	bayes_pls_golite062009
N-methyltransferase activity	3.00112136063228	bayes_pls_golite062009
rRNA methyltransferase activity	2.80578045927127	bayes_pls_golite062009
protein methyltransferase activity	2.74535979387581	bayes_pls_golite062009
transferase activity	2.42370637689376	bayes_pls_golite062009
DNA-methyltransferase activity	1.8182614465692	bayes_pls_golite062009
catalytic activity	1.62377578202456	bayes_pls_golite062009
histone methyltransferase activity	1.42140847541194	bayes_pls_golite062009
arginine N-methyltransferase activity	1.40233857644962	bayes_pls_golite062009
protein-arginine N-methyltransferase activity	1.40233857644962	bayes_pls_golite062009
tRNA methyltransferase activity	1.32437128142157	bayes_pls_golite062009
site-specific DNA-methyltransferase (adenine-specific) activity	0.88654745691593	bayes_pls_golite062009
rRNA (uridine) methyltransferase activity	0.75904932606473	bayes_pls_golite062009
rRNA (adenine) methyltransferase activity	0.72946673557525	bayes_pls_golite062009
histone-arginine N-methyltransferase activity	0.67380437956274	bayes_pls_golite062009
rRNA (adenine-N6,N6-)-dimethyltransferase activity	0.62885479399246	bayes_pls_golite062009
protein-arginine omega-N monomethyltransferase activity	0.355464145533041	bayes_pls_golite062009
rRNA (cytosine) methyltransferase activity	0.346042596102079	bayes_pls_golite062009
O-methyltransferase activity	0.32686871890222	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: