YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229518673, gi...
Organism:	Vibrio cholerae RC9
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229518673, gi....

Description	E-value	Query Range	Subject Range
gi\|37198341, gi\|... - gi\|37679597\|ref\|NP_934206.1\| heat shock protein [Vibrio vulnificus YJ016], gi\|37198341\|dbj\|BAC94177....	176.0	[0..1]	[145..1]
gi\|91189415, gi\|... - gi\|91225974\|ref\|ZP_01260901.1\| heat shock protein HslJ [Vibrio alginolyticus 12G01], gi\|91189415\|gb\|...	174.0	[0..1]	[146..1]
gi\|153837498, gi... - gi\|153837498\|ref\|ZP_01990165.1\| heat shock protein HslJ [Vibrio parahaemolyticus AQ3810], gi\|1497491... gi\|28806191, gi\|... - gi\|28897977\|ref\|NP_797582.1\| heat shock protein HslJ [Vibrio parahaemolyticus RIMD 2210633], gi\|2880... gi\|28806191 - gi\|28806191\|dbj\|BAC59466.1\| heat shock protein HslJ [Vibrio parahaemolyticus RIMD 2210633]	174.0	[0..1]	[146..1]
gi\|75827017 - gi\|75827017\|ref\|ZP_00756452.1\| COG3187: Heat shock protein [Vibrio cholerae O395] gi\|116190057, gi... - gi\|75831000\|ref\|ZP_00760268.1\| COG3187: Heat shock protein [Vibrio cholerae MO10], gi\|116190057\|ref\|... gi\|126520617, gi... - gi\|153821819\|ref\|ZP_01974486.1\| heat shock protein HslJ [Vibrio cholerae B33], gi\|126520617\|gb\|EAZ77... gi\|75815828 - gi\|75815828\|ref\|ZP_00746319.1\| COG3187: Heat shock protein [Vibrio cholerae V52]	165.0	[0..18]	[147..1]
gi\|75818161, gi\|... - gi\|75818161\|ref\|ZP_00748367.1\| COG3187: Heat shock protein [Vibrio cholerae V51], gi\|116218952\|ref\|Z...	164.0	[0..18]	[147..1]
gi\|27366138, gi\|... - gi\|27366138\|ref\|NP_761666.1\| heat shock protein [Vibrio vulnificus CMCP6], gi\|27362338\|gb\|AAO11193.1...	163.0	[0..14]	[145..1]
gi\|84394681, gi\|... - gi\|84394681\|ref\|ZP_00993365.1\| heat shock protein HslJ [Vibrio splendidus 12B01], gi\|84374696\|gb\|EAP...	158.0	[0..1]	[146..1]
gi\|86147789, gi\|... - gi\|86147789\|ref\|ZP_01066096.1\| heat shock protein HslJ [Vibrio sp. MED222], gi\|85834427\|gb\|EAQ52578....	156.0	[0..1]	[146..1]
gi\|59711468, gi\|... - gi\|59711468\|ref\|YP_204244.1\| heat shock protein HslJ [Vibrio fischeri ES114], gi\|59479569\|gb\|AAW8535...	154.0	[0..5]	[146..1]
gi\|90327305, gi\|... - gi\|90411743\|ref\|ZP_01219752.1\| putative heat shock protein HslJ [Photobacterium profundum 3TCK], gi\|...	143.0	[0..5]	[142..2]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLSSKSLLA AITLPVLMTA CASNGDAVQI TAQDLQHHNW QLTQIDGKDV VKSEHEQAPR  60
   61 LEIGEQMMAS GNAGCNNFFG KAELKDNQFR IEKMGMTMKM CIGDAMDTEQ AVSQTLTDWS 120
  121 QITLTKETLT LKNDVHTLTF TLRDWVK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.18
Match:	1qwdA
Description:	CRYSTAL STRUCTURE OF A BACTERIAL LIPOCALIN, THE BLC GENE PRODUCT FROM E. COLI
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits