YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|227072661, gi...
Organism:	Enterococcus faecalis TX0104
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|227072661, gi....

Description	E-value	Query Range	Subject Range
GATB_MOOTA - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Moorella thermoacetica (strain ATCC 39...	151.0	[0..3]	[146..330]
gi\|88925125, gi\|... - gi\|88945252\|ref\|ZP_01148466.1\| Glutamyl-tRNA(Gln) amidotransferase B subunit [Desulfotomaculum reduc...	147.0	[0..1]	[146..330]
gi\|89896631, gi\|... - gi\|89896631\|ref\|YP_520118.1\| aspartyl/glutamyl-tRNA amidotransferase subunit B [Desulfitobacterium h... gi\|109647234, gi... - gi\|68206305\|ref\|ZP_00558495.1\| Glutamyl-tRNA(Gln) amidotransferase B subunit [Desulfitobacterium haf...	147.0	[0..4]	[148..336]
GATB_CARHZ - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Carboxydothermus hydrogenoformans (str...	142.0	[0..1]	[148..323]
GATB_GEOKA - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Geobacillus kaustophilus (strain HTA42... GATB_GEOKA - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Geobacillus kaustophilus GN=gatB PE=3 ...	141.0	[0..10]	[148..329]
GATB_GEOUR - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Geobacter uraniireducens (strain Rf4) ...	140.0	[0..17]	[147..345]
GATB_GEOSE - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Geobacillus stearothermophilus GN=gatB...	140.0	[0..12]	[148..331]
GATB_GEODF - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Geobacter daltonii (strain DSM 22248 /...	140.0	[0..17]	[147..345]
gi\|98660243 - gi\|98660243\|dbj\|GAA02418.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	140.0	[0..17]	[146..362]
gi\|58583749, gi\|... - gi\|58583749\|ref\|YP_202765.1\| hypothetical protein XOO4126 [Xanthomonas oryzae pv. oryzae KACC10331],...	139.0	[0..1]	[147..51]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLTTLNDD IKTAMKAKDK ETLAVLRMLK TAIQNDQIKA GRELNGEEEL TVLSREMKQR  60
   61 KDSLSEFEKA GRDDLVEKVK VEIAIVEKYM PQQLTEEEIR QLVQEVMTQT GATSPKDFGK 120
  121 VMGAMMPKVK GKADGNQVNA IVKELLQEN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.39794
Match:	1ng6A
Description:	Hypothetical protein YqeY
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits