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View Structure Prediction Details

Protein: gi|50355736, gi|...
Organism: Oryza sativa Japonica Group
Length: 372 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50355736, gi|....

Description E-value Query
Range
Subject
Range
gi|27819501 - gi|27819501|gb|AAO24905.1| putative zinc finger protein [Oryza sativa (japonica cultivar-group)]
186.0 [0..1] [372..1]

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Predicted Domain #1
Region A:
Residues: [1-146]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEKVKMESK LSSAAAFVEG GVQDACDDAC SICLEAFCDN DPSTVTSCKH EYHLQCILEW  60
   61 CQRSSQCPMC WQPISMKDPM SQELLEAVEQ ERNIRANRLN TAAVFHHPVL GDFEVPVGAD 120
  121 DAELEERIIQ HLAAAAAMRR SHRHGR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.39794
Match: 2cklB
Description: No description for 2cklB was found.

Predicted Domain #2
Region A:
Residues: [147-215]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RDGHRSRSGS HSRPQIVVFS RNEAIPGGSL HASSGQDEDH EQSSDLGSAH PFAALAAVDQ  60
   61 GHMSGGSQL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [216-372]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YVGHSDQGAS NPSLHDERAM SRTSENQSAP VNQDTAGPSD LQSFSDTLRS RLQSASMKYK  60
   61 DSITKSTRGW KERWFSRSNT ISGLGTEVRR EVNAGIAAVS RMMERLETKD DTGPSAVPAA 120
  121 SACSPSDANN QRTVSPNHAA VVNETSSTTC ASGSGSQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle