YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254703823
Organism:	Brucella suis bv. 3 str. 686
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254703823.

Description	E-value	Query Range	Subject Range
gi\|254729799 - gi\|254729799\|ref\|ZP_05188377.1\| Surf1 protein [Brucella abortus bv. 4 str. 292] gi\|254688766 - gi\|254688766\|ref\|ZP_05152020.1\| Surf1 protein [Brucella abortus bv. 6 str. 870] gi\|254696895 - gi\|254696895\|ref\|ZP_05158723.1\| Surf1 protein [Brucella abortus bv. 2 str. 86/8/59] gi\|82615482 - gi\|82615482\|emb\|CAJ10456.1\| Surf1 protein [Brucella melitensis biovar Abortus 2308] gi\|82699381 - gi\|82699381\|ref\|YP_413955.1\| Surf1 protein [Brucella melitensis biovar Abortus 2308] gi\|62195587, gi\|... - gi\|62289455\|ref\|YP_221248.1\| SurF1 family protein [Brucella abortus bv. 1 str. 9-941], gi\|62195587\|g... gi\|237789779, gi... - gi\|237814942\|ref\|ZP_04593940.1\| Surfeit locus protein 1 [Brucella abortus str. 2308 A], gi\|237789779... gi\|189023704, gi... - gi\|189023704\|ref\|YP_001934472.1\| Surf1 protein [Brucella abortus S19], gi\|189019276\|gb\|ACD71998.1\| S...	278.0	[0..1]	[249..1]
gi\|15073842 - gi\|15073842\|emb\|CAC45483.1\| Probable Surf [Sinorhizobium meliloti 1021] gi\|15964664 - gi\|15964664\|ref\|NP_385017.1\| putative cytochrome oxidase complex biogenesis factor transmembrane pro...	256.0	[0..1]	[245..1]
gi\|45915456, gi\|... - gi\|69278261\|ref\|ZP_00613472.1\| Surfeit locus 1 [Mesorhizobium sp. BNC1], gi\|68191234\|gb\|EAN05891.1\| ...	250.0	[0..1]	[248..1]
gi\|30851526 - gi\|30851526\|gb\|AAH52500.1\| Surf1 protein [Mus musculus]	240.0	[0..17]	[243..29]
gi\|115255450, gi... - gi\|116250802\|ref\|YP_766640.1\| putative transmembrane cytochrome oxidase biogenesis protein [Rhizobiu...	240.0	[0..3]	[227..6]
gi\|33086478 - gi\|33086478\|gb\|AAP92551.1\| Ab1-205 [Rattus norvegicus]	238.0	[0..17]	[243..499]
gi\|90335445, gi\|... - gi\|90420111\|ref\|ZP_01228019.1\| SurF1 family protein, involved in cytochrome c oxidase biogenesis [Au... gi\|90335445 - gi\|90335445\|gb\|EAS49195.1\| SurF1 family protein, involved in cytochrome c oxidase biogenesis [Aurant...	237.0	[0..3]	[248..18]
gi\|25349734, gi\|... - pir\|\|E97453 surfeit 1 (AF182952) [imported] - Agrobacterium tumefaciens (strain C58, Cereon), pir\|... gi\|17934683, gi\|... - gi\|17934683\|ref\|NP_531473.1\| surfeit 1 [Agrobacterium tumefaciens str. C58], gi\|17739143\|gb\|AAL41789...	236.0	[0..5]	[246..16]

Back

Predicted Domain #1

Region A:
Residues: [1-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLEQTSRRF PWGVLIASGI ALVILLSLGT WQVERLMWKE ALIASTEQRI HEPPLPLAEM  60
   61 EKIYRQEGTV EYRPVTVSGT FLHQGERHFL ATYKGEAGFY VYTPLMLEDG RFVLVNRGFV 120
  121 PYEKKDPATR PAGELAAGPV KVTGLARDPL SVKPSFLVPD NDIAKNIFYW KDWAAMAESA 180
  181 GLPDLGRVVP FFVDADSTPN PGGLPIGGVT IIDFPNNHLQ YAVTWYGLAL ALIGVVGTWL 240
  241 WRYRKSGRG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits