YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229513847, gi...
Organism:	Vibrio cholerae TMA 21
Length:	255 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229513847, gi....

Description	E-value	Query Range	Subject Range
gi\|59480588, gi\|... - gi\|59712487\|ref\|YP_205263.1\| flagellar basal body P-ring biosynthesis protein FlgA [Vibrio fischeri ...	253.0	[0..20]	[255..18]
gi\|37197883, gi\|... - gi\|37679141\|ref\|NP_933750.1\| flagellar basal body P-ring biosynthesis protein FlgA [Vibrio vulnificu...	247.0	[0..15]	[255..8]
gi\|27359827, gi\|... - gi\|27363711\|ref\|NP_759239.1\| flagellar basal body P-ring biosynthesis protein FlgA [Vibrio vulnificu...	247.0	[0..15]	[255..8]
gi\|91189517, gi\|... - gi\|91225867\|ref\|ZP_01260836.1\| flagellar basal body P-ring biosynthesis protein A [Vibrio alginolyti...	246.0	[0..19]	[255..12]
gi\|28805758, gi\|... - gi\|5361002\|gb\|AAD42909.1\|U12817_3 polar flagellar FlgA homolog [Vibrio parahaemolyticus], gi\|2880575... gi\|28805758, gi\|... - gi\|28897546\|ref\|NP_797151.1\| flagellar basal body P-ring biosynthesis protein FlgA [Vibrio parahaemo...	245.0	[0..22]	[255..15]
gi\|54308091, gi\|... - gi\|54308091\|ref\|YP_129111.1\| flagellar basal body P-ring biosynthesis protein FlgA [Photobacterium p...	235.0	[0..24]	[255..4]
gi\|90328212, gi\|... - gi\|90410999\|ref\|ZP_01219013.1\| flagellar basal body P-ring biosynthesis protein [Photobacterium prof...	227.0	[0..24]	[255..4]
gi\|23092309 - gi\|23092309\|gb\|AAN08634.1\| FlgA [Aeromonas hydrophila]	224.0	[0..29]	[255..112]
gi\|75855308, gi\|... - gi\|75855308\|ref\|ZP_00762963.1\| COG1261: Flagellar basal body P-ring biosynthesis protein [Vibrio sp....	224.0	[0..40]	[255..1]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKPEKRKMH PKIDLHSHFI TKCRAFCEIF YSFIGFLLFF FSLAANAATP EQLSMIKEAA  60
   61 ENHVLSTVDM PAGGELVVNA ANIDDRLFAT DCPEPLTTNS SSSNGSAANI TVLVECK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [118-255]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDNWRVYVPV RLTITIPLIT AATPLSRGQM ISAQDVTLSM VDLLRFRRQG FSTPENVIGA  60
   61 KIKKNIRVGD VIEQNDVCIV CRNESVVIRA GKSGMSITTK GTAMSDGVVG EQIKVKNDKS 120
  121 NRIIDAQVSG VGEVTVAF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.75
Match:	1wvoA
Description:	Solution structure of RSGI RUH-029, an antifreeze protein like domain in human N-acetylneuraminic acid phosphate synthase gene.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits