YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254760040
Organism:	Bacillus anthracis str. Australia 94
Length:	199 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254760040.

Description	E-value	Query Range	Subject Range
gi\|25335016 - pir\|\|C97307 nitroreductase family protein [imported] - Clostridium acetobutylicum gi\|15896557, gi\|... - gi\|15896557\|ref\|NP_349906.1\| nitroreductase family protein [Clostridium acetobutylicum ATCC 824], gi...	2.0E-41	[1..198]	[1..198]
gi\|228812748, gi... - gi\|228947016\|ref\|ZP_04109313.1\| hypothetical protein bthur0007_31470 [Bacillus thuringiensis serovar... gi\|49329763, gi\|... - gi\|49478207\|ref\|YP_037495.1\| nitroreductase family protein [Bacillus thuringiensis serovar konkukian... gi\|228928438, gi... - gi\|228928438\|ref\|ZP_04091478.1\| hypothetical protein bthur0010_31360 [Bacillus thuringiensis serovar... gi\|228660503, gi... - gi\|229122919\|ref\|ZP_04252127.1\| hypothetical protein bcere0016_32100 [Bacillus cereus 95/8201], gi\|2... gi\|218538562, gi... - gi\|218904526\|ref\|YP_002452360.1\| hypothetical protein BCAH820_3410 [Bacillus cereus AH820], gi\|21853... gi\|196035581, gi... - gi\|196035581\|ref\|ZP_03102985.1\| conserved hypothetical protein [Bacillus cereus W], gi\|195991882\|gb\|...	3.0E-41	[1..199]	[1..199]
gi\|47553328, gi\|... - gi\|47569980\|ref\|ZP_00240643.1\| nitroreductase family protein [Bacillus cereus G9241], gi\|47553328\|gb...	4.0E-41	[1..199]	[1..199]
gi\|52142142, gi\|... - gi\|52142142\|ref\|YP_084686.1\| nitroreductase family protein [Bacillus cereus E33L], gi\|51975611\|gb\|AA... gi\|228916005, gi... - gi\|228916005\|ref\|ZP_04079578.1\| hypothetical protein bthur0012_32230 [Bacillus thuringiensis serovar...	5.0E-41	[1..199]	[1..199]
gi\|42737025, gi\|... - gi\|42781104\|ref\|NP_978351.1\| hypothetical protein BCE_2035 [Bacillus cereus ATCC 10987], gi\|42737025...	5.0E-41	[1..199]	[1..199]
gi\|165870227, gi... - gi\|165870227\|ref\|ZP_02214883.1\| conserved hypothetical protein [Bacillus anthracis str. A0488], gi\|1... gi\|227005446, gi... - gi\|227815229\|ref\|YP_002815238.1\| hypothetical protein BAMEG_2640 [Bacillus anthracis str. CDC 684], ... gi\|167531945, gi... - gi\|167633133\|ref\|ZP_02391459.1\| conserved hypothetical protein [Bacillus anthracis str. A0442], gi\|1... gi\|229602608, gi... - gi\|229602608\|ref\|YP_002866354.1\| hypothetical protein BAA_2020 [Bacillus anthracis str. A0248], gi\|2... gi\|170129051, gi... - gi\|170706049\|ref\|ZP_02896511.1\| conserved hypothetical protein [Bacillus anthracis str. A0389], gi\|1... gi\|172083391, gi... - gi\|177650930\|ref\|ZP_02933827.1\| conserved hypothetical protein [Bacillus anthracis str. A0174], gi\|1... gi\|167638423, gi... - gi\|167638423\|ref\|ZP_02396700.1\| conserved hypothetical protein [Bacillus anthracis str. A0193], gi\|1... gi\|170686612, gi... - gi\|170686612\|ref\|ZP_02877833.1\| conserved hypothetical protein [Bacillus anthracis str. A0465], gi\|1... gi\|190566381, gi... - gi\|190566381\|ref\|ZP_03019299.1\| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I], ... gi\|65319266 - gi\|65319266\|ref\|ZP_00392225.1\| COG3560: Predicted oxidoreductase related to nitroreductase [Bacillus...	7.0E-41	[1..199]	[2..200]
gi\|228654861, gi... - gi\|229128668\|ref\|ZP_04257646.1\| hypothetical protein bcere0015_31140 [Bacillus cereus BDRD-Cer4], gi... gi\|29897049, gi\|... - gi\|30021494\|ref\|NP_833125.1\| nitroreductase family protein [Bacillus cereus ATCC 14579], gi\|29897049...	2.0E-40	[1..199]	[1..199]

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Predicted Domain #1

Region A:
Residues: [1-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKDFYSAIE DRRSIYAISK EQVVSDEKIQ EVIYHAVKHT PSAFNSQSAR VVVLLGEQHD  60
   61 KLWDITKETL RKIVPENNFA STEEKMNAFK SGYGTVLYFE DNQVVEELQE NFALYKDNFP 120
  121 IWSQQSSGML QFAIWTALEI EGFGATLQHY NPLIDEEVRK EWEVPESWKL IAQMPFGKPV 180
  181 VPAGEKEFQP LENCVKFYK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.045757
Match:	1ywqA
Description:	Crystal structure of a nitroreductase family protein from Bacillus cereus ATCC 14579
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.88351700678	bayes_pls_golite062009
NAD(P)H nitroreductase activity	1.73743442947569	bayes_pls_golite062009
catalytic activity	1.11149969304282	bayes_pls_golite062009
protein binding	0.385179389448981	bayes_pls_golite062009
oxidoreductase activity	0.27929339949687	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: