YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|237707224, gi...
Organism:	Escherichia sp. 3_2_53FAA
Length:	173 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|237707224, gi....

Description	E-value	Query Range	Subject Range
gi\|189363567, gi... - gi\|189363567\|gb\|EDU81986.1\| outer membrane protein X [Escherichia coli O157:H7 str. EC4486], gi\|1687... gi\|168763339, gi... - gi\|189366537\|gb\|EDU84953.1\| outer membrane protein X [Escherichia coli O157:H7 str. EC4501], gi\|1687... gi\|189003057, gi... - gi\|189003057\|gb\|EDU72043.1\| outer membrane protein X [Escherichia coli O157:H7 str. EC4076], gi\|1687... gi\|187768198, gi... - gi\|187768198\|gb\|EDU32042.1\| outer membrane protein X [Escherichia coli O157:H7 str. EC4196], gi\|1687... gi\|189377747, gi... - gi\|189377747\|gb\|EDU96163.1\| outer membrane protein X [Escherichia coli O157:H7 str. EC508], gi\|16879... gi\|189373197, gi... - gi\|189373197\|gb\|EDU91613.1\| outer membrane protein X [Escherichia coli O157:H7 str. EC869], gi\|16878... gi\|169888308, gi... - gi\|170080473\|ref\|YP_001729793.1\| outer membrane protein [Escherichia coli str. K-12 substr. DH10B], ... gi\|170020830, gi... - gi\|170020830\|ref\|YP_001725784.1\| outer membrane protein X [Escherichia coli ATCC 8739], gi\|169755758... EG12135 - outer membrane protein X / Outer membrane protein X; role in inducing RNAP-sigma E production OMPX_ECOLI - Outer membrane protein X precursor - Escherichia coli gi\|168756605, gi... - gi\|189356249\|gb\|EDU74668.1\| outer membrane protein X [Escherichia coli O157:H7 str. EC4401], gi\|1687... OMPX_SHIFL - Outer membrane protein X OS=Shigella flexneri GN=ompX PE=3 SV=1 gi\|188015695, gi... - gi\|188015695\|gb\|EDU53817.1\| outer membrane protein X [Escherichia coli O157:H7 str. EC4113], gi\|1687... gi\|217326499, gi... - gi\|217326499\|ref\|ZP_03442583.1\| outer membrane protein X [Escherichia coli O157:H7 str. TW14588], gi... gi\|215485901, gi... - gi\|215485901\|ref\|YP_002328332.1\| outer membrane protein X [Escherichia coli O127:H6 str. E2348/69], ... gi\|218557719, gi... - gi\|218557719\|ref\|YP_002390632.1\| outer membrane protein X [Escherichia coli S88], gi\|218364488\|emb\|C... gi\|218553400, gi... - gi\|218553400\|ref\|YP_002386313.1\| outer membrane protein X [Escherichia coli IAI1], gi\|218360168\|emb\|... gi\|218351020, gi... - gi\|218694288\|ref\|YP_002401955.1\| outer membrane protein X [Escherichia coli 55989], gi\|218351020\|emb... OMPX_ECOL6 - Outer membrane protein X OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ompX PE=3... gi\|218426163, gi... - gi\|218688599\|ref\|YP_002396811.1\| outer membrane protein X [Escherichia coli ED1a], gi\|218426163\|emb\|... gi\|218704192, gi... - gi\|218704192\|ref\|YP_002411711.1\| outer membrane protein X [Escherichia coli UMN026], gi\|218431289\|em... gi\|218699188, gi... - gi\|218699188\|ref\|YP_002406817.1\| outer membrane protein X [Escherichia coli IAI39], gi\|218369174\|emb... gi\|194433135, gi... - gi\|194433135\|ref\|ZP_03065417.1\| outer membrane protein X [Shigella dysenteriae 1012], gi\|194418632\|g... gi\|170519270, gi... - gi\|170681552\|ref\|YP_001742918.1\| outer membrane protein X [Escherichia coli SMS-3-5], gi\|170519270\|g... gi\|208727055, gi... - gi\|208807254\|ref\|ZP_03249591.1\| outer membrane protein X [Escherichia coli O157:H7 str. EC4206], gi\|... gi\|195936855 - gi\|195936855\|ref\|ZP_03082237.1\| outer membrane protein X [Escherichia coli O157:H7 str. EC4024] gi\|208822052, gi... - gi\|208822052\|ref\|ZP_03262371.1\| outer membrane protein X [Escherichia coli O157:H7 str. EC4042], gi\|... gi\|208732286, gi... - gi\|208815638\|ref\|ZP_03256817.1\| outer membrane protein X [Escherichia coli O157:H7 str. EC4045], gi\|... gi\|209911320, gi... - gi\|209918061\|ref\|YP_002292145.1\| outer membrane protein X [Escherichia coli SE11], gi\|209911320\|dbj\|... gi\|209400925, gi... - gi\|209400925\|ref\|YP_002269484.1\| outer membrane protein X [Escherichia coli O157:H7 str. EC4115], gi... gi\|30040543, gi\|... - gi\|30062298\|ref\|NP_836469.1\| outer membrane protein X [Shigella flexneri 2a str. 2457T], gi\|30040543... OMPX_ECOL6 - Outer membrane protein X OS=Escherichia coli O6 GN=ompX PE=3 SV=1 OMPX_ECO57 - Outer membrane protein X OS=Escherichia coli O157:H7 GN=ompX PE=3 SV=1 EG12135 - outer membrane protein X / Outer membrane protein X; role in inducing RNAP-sigma E production gi\|12513813, gi\|... - gi\|15800566\|ref\|NP_286578.1\| outer membrane protein X [Escherichia coli O157:H7 EDL933], gi\|12513813... gi\|124527032, gi... - gi\|124527032\|ref\|ZP_01698869.1\| virulence-related outer membrane protein [Escherichia coli B], gi\|12... gi\|227838974, gi... - gi\|227884222\|ref\|ZP_04002027.1\| outer membrane protein X [Escherichia coli 83972], gi\|227838974\|gb\|E... gi\|238861957, gi... - gi\|238900073\|ref\|YP_002925869.1\| outer membrane protein [Escherichia coli BW2952], gi\|238861957\|gb\|A... gi\|242376606, gi... - gi\|251784333\|ref\|YP_002998637.1\| hypothetical protein B21_00798 [Escherichia coli BL21], gi\|24237660... gi\|253774183, gi... - gi\|254287705\|ref\|YP_003053453.1\| outer membrane protein X [Escherichia coli BL21(DE3)], gi\|253977012... gi\|253972792, gi... - gi\|254160891\|ref\|YP_003043999.1\| outer membrane protein X [Escherichia coli B str. REL606], gi\|25397... gi\|254792010, gi... - gi\|254792010\|ref\|YP_003076847.1\| outer membrane protein [Escherichia coli O157:H7 str. TW14359], gi\|... gi\|56383285, gi\|... - gi\|56479734\|ref\|NP_706692.2\| outer membrane protein X [Shigella flexneri 2a str. 301], gi\|56383285\|g... gi\|190905993, gi... - gi\|75238149\|ref\|ZP_00722153.1\| COG3637: Opacity protein and related surface antigens [Escherichia co... gi\|110614362, gi... - gi\|110804814\|ref\|YP_688334.1\| outer membrane protein X [Shigella flexneri 5 str. 8401], gi\|110614362... gi\|75257588, gi\|... - gi\|75257588\|ref\|ZP_00729085.1\| COG3637: Opacity protein and related surface antigens [Escherichia co... gi\|191166158, gi... - gi\|75230658\|ref\|ZP_00717129.1\| COG3637: Opacity protein and related surface antigens [Escherichia co... gi\|193069383, gi... - gi\|75236128\|ref\|ZP_00720252.1\| COG3637: Opacity protein and related surface antigens [Escherichia co... gi\|81240255, gi\|... - gi\|82776107\|ref\|YP_402454.1\| outer membrane protein X [Shigella dysenteriae Sd197], gi\|81240255\|gb\|A... gi\|194422619, gi... - gi\|83586118\|ref\|ZP_00924755.1\| COG3637: Opacity protein and related surface antigens [Escherichia co... gi\|81244671, gi\|... - gi\|82543260\|ref\|YP_407207.1\| outer membrane protein X [Shigella boydii Sb227], gi\|81244671\|gb\|ABB653... gi\|89107665, gi\|... - gi\|89107665\|ref\|AP_001445.1\| outer membrane protein [Escherichia coli str. K-12 substr. W3110], gi\|1... gi\|75512820, gi\|... - gi\|75512820\|ref\|ZP_00735312.1\| COG3637: Opacity protein and related surface antigens [Escherichia co... gi\|13360351, gi\|... - gi\|15830146\|ref\|NP_308919.1\| outer membrane protein X [Escherichia coli O157:H7 str. Sakai], gi\|1336... gi\|73854834, gi\|... - gi\|74311357\|ref\|YP_309776.1\| outer membrane protein X [Shigella sonnei Ss046], gi\|73854834\|gb\|AAZ875... gi\|110342610, gi... - gi\|110641018\|ref\|YP_668746.1\| outer membrane protein X [Escherichia coli 536], gi\|110342610\|gb\|ABG68... gi\|75194965, gi\|... - gi\|75194965\|ref\|ZP_00705035.1\| COG3637: Opacity protein and related surface antigens [Escherichia co... gi\|194413774, gi... - gi\|75210591\|ref\|ZP_00710739.1\| COG3637: Opacity protein and related surface antigens [Escherichia co... gi\|75178393, gi\|... - gi\|75178393\|ref\|ZP_00698447.1\| COG3637: Opacity protein and related surface antigens [Shigella boydi... gi\|157077437, gi... - gi\|75189855\|ref\|ZP_00703122.1\| COG3637: Opacity protein and related surface antigens [Escherichia co...	161.0	[0..3]	[173..1]
gi\|161614912, gi... - gi\|161614912\|ref\|YP_001588877.1\| outer membrane protein X [Salmonella enterica subsp. enterica serov... gi\|205324576, gi... - gi\|205324576\|gb\|EDZ12415.1\| outer membrane protein X [Salmonella enterica subsp. enterica serovar Sa... gi\|205329585, gi... - gi\|205329585\|gb\|EDZ16349.1\| outer membrane protein X [Salmonella enterica subsp. enterica serovar 4,... gi\|168230738, gi... - gi\|205334871\|gb\|EDZ21635.1\| outer membrane protein X [Salmonella enterica subsp. enterica serovar Ke... gi\|238913899 - gi\|238913899\|ref\|ZP_04657736.1\| outer membrane protein X [Salmonella enterica subsp. enterica serova... gi\|56414068, gi\|... - gi\|56414068\|ref\|YP_151143.1\| outer membrane protein X [Salmonella enterica subsp. enterica serovar P... gi\|200390627, gi... - gi\|200390627\|ref\|ZP_03217238.1\| outer membrane protein X [Salmonella enterica subsp. enterica serova... gi\|204929987, gi... - gi\|204929987\|ref\|ZP_03221008.1\| outer membrane protein X [Salmonella enterica subsp. enterica serova... gi\|207856269, gi... - gi\|207856269\|ref\|YP_002242920.1\| outer membrane protein X [Salmonella enterica subsp. enterica serov... gi\|213022642 - gi\|213022642\|ref\|ZP_03337089.1\| outer membrane protein X [Salmonella enterica subsp. enterica serova... gi\|194734266, gi... - gi\|194734266\|ref\|YP_002113926.1\| outer membrane protein X [Salmonella enterica subsp. enterica serov... gi\|197213828, gi... - gi\|197250125\|ref\|YP_002145791.1\| outer membrane protein X [Salmonella enterica subsp. enterica serov... gi\|197265131, gi... - gi\|197265131\|ref\|ZP_03165205.1\| outer membrane protein X [Salmonella enterica subsp. enterica serova... gi\|197094468, gi... - gi\|197362991\|ref\|YP_002142628.1\| outer membrane protein X [Salmonella enterica subsp. enterica serov... gi\|25301837, gi\|... - gi\|25301837\|pir\|\|AF0601 outer membrane protein x precursor ompX [imported] - Salmonella enterica sub... gi\|168820014, gi... - gi\|205343079\|gb\|EDZ29843.1\| outer membrane protein X [Salmonella enterica subsp. enterica serovar We... gi\|16419339, gi\|... - gi\|16764195\|ref\|NP_459810.1\| outer membrane protein X [Salmonella typhimurium LT2], gi\|16419339\|gb\|A... gi\|194402369, gi... - gi\|194443706\|ref\|YP_002040071.1\| outer membrane protein X [Salmonella enterica subsp. enterica serov... gi\|194405823, gi... - gi\|194447519\|ref\|YP_002044863.1\| outer membrane protein X [Salmonella enterica subsp. enterica serov... gi\|194458711, gi... - gi\|194472347\|ref\|ZP_03078331.1\| outer membrane protein X [Salmonella enterica subsp. enterica serova... gi\|197290143, gi... - gi\|197290143\|gb\|EDY29500.1\| outer membrane protein X [Salmonella enterica subsp. enterica serovar Sc... gi\|168240704, gi... - gi\|205340064\|gb\|EDZ26828.1\| outer membrane protein X [Salmonella enterica subsp. enterica serovar He... gi\|29142476, gi\|... - gi\|29142476\|ref\|NP_805818.1\| outer membrane protein X [Salmonella enterica subsp. enterica serovar T... gi\|205347791, gi... - gi\|205347791\|gb\|EDZ34422.1\| outer membrane protein X [Salmonella enterica subsp. enterica serovar Ha... gi\|16759751 - gi\|16759751\|ref\|NP_455368.1\| outer membrane protein X [Salmonella enterica subsp. enterica serovar T... gi\|62127032, gi\|... - gi\|62179399\|ref\|YP_215816.1\| outer membrane protein X [Salmonella enterica subsp. enterica serovar C... gi\|168466437, gi... - gi\|195630888\|gb\|EDX49474.1\| outer membrane protein X [Salmonella enterica subsp. enterica serovar Ne... gi\|213650503 - gi\|213650503\|ref\|ZP_03380556.1\| outer membrane protein X [Salmonella enterica subsp. enterica serova... gi\|213850151 - gi\|213850151\|ref\|ZP_03381049.1\| outer membrane protein X [Salmonella enterica subsp. enterica serova... gi\|213999276 - gi\|213999276\|ref\|ZP_03410011.1\| outer membrane protein X [Salmonella enterica subsp. enterica serova... gi\|213163834 - gi\|213163834\|ref\|ZP_03349544.1\| outer membrane protein X [Salmonella enterica subsp. enterica serova... gi\|213423461 - gi\|213423461\|ref\|ZP_03356443.1\| outer membrane protein X [Salmonella enterica subsp. enterica serova... gi\|213424774 - gi\|213424774\|ref\|ZP_03357524.1\| outer membrane protein X [Salmonella enterica subsp. enterica serova... gi\|213622110 - gi\|213622110\|ref\|ZP_03374893.1\| outer membrane protein X [Salmonella enterica subsp. enterica serova... lcl\|NC_016856.1_... - [gene=ompX] [protein=outer membrane protein X] [protein_id=YP_005236564.1] [location=900586..901101]	161.0	[0..3]	[173..1]
gi\|21958481, gi\|... - gi\|22125577\|ref\|NP_669000.1\| outer membrane protein X [Yersinia pestis KIM], gi\|21958481\|gb\|AAM85251... gi\|45442111, gi\|... - gi\|45442111\|ref\|NP_993650.1\| outer membrane protein X [Yersinia pestis biovar Microtus str. 91001], ...	152.0	[0..1]	[173..1]
gi\|587548 - gi\|587548\|emb\|CAA85513.1\| outer membrane protein [Serratia marcescens]	152.0	[0..3]	[173..1]
gi\|167422243, gi... - gi\|167422243\|ref\|ZP_02313996.1\| outer membrane protein X [Yersinia pestis biovar Orientalis str. MG0... gi\|229694405, gi... - gi\|229838039\|ref\|ZP_04458198.1\| putative outer membrane protein [Yersinia pestis biovar Orientalis s... gi\|166204956, gi... - gi\|166213782\|ref\|ZP_02239817.1\| outer membrane protein X [Yersinia pestis biovar Antiqua str. B42003... gi\|229895238, gi... - gi\|229895238\|ref\|ZP_04510412.1\| putative outer membrane protein [Yersinia pestis Pestoides A], gi\|22... gi\|167466403 - gi\|167466403\|ref\|ZP_02331107.1\| outer membrane protein X [Yersinia pestis FV-1] gi\|229688147, gi... - gi\|229898599\|ref\|ZP_04513744.1\| putative outer membrane protein [Yersinia pestis biovar Orientalis s... gi\|167426949, gi... - gi\|167426949\|ref\|ZP_02318702.1\| outer membrane protein X [Yersinia pestis biovar Mediaevalis str. K1... gi\|77633148, gi\|... - gi\|77633148\|ref\|ZP_00795296.1\| COG3637: Opacity protein and related surface antigens [Yersinia pesti... gi\|186698968, gi... - gi\|186895942\|ref\|YP_001873054.1\| outer membrane protein X [Yersinia pseudotuberculosis PB1/+], gi\|18... gi\|152959454, gi... - gi\|77629595\|ref\|ZP_00792181.1\| COG3637: Opacity protein and related surface antigens [Yersinia pseud... gi\|149365585, gi... - gi\|149365585\|ref\|ZP_01887620.1\| putative outer membrane protein [Yersinia pestis CA88-4125], gi\|1492... gi\|170023847, gi... - gi\|170023847\|ref\|YP_001720352.1\| outer membrane protein X [Yersinia pseudotuberculosis YPIII], gi\|16... gi\|145599198, gi... - gi\|145599198\|ref\|YP_001163274.1\| outer membrane protein X [Yersinia pestis Pestoides F], gi\|14521089... gi\|165992854, gi... - gi\|166008472\|ref\|ZP_02229370.1\| outer membrane protein X [Yersinia pestis biovar Antiqua str. E19790... Q669E5\|Q669E5_YERPS - Putative outer membrane protein precursor - Yersinia pseudotuberculosis gi\|165925424, gi... - gi\|165925424\|ref\|ZP_02221256.1\| outer membrane protein X [Yersinia pestis biovar Orientalis str. F19... gi\|51596861, gi\|... - gi\|51596861\|ref\|YP_071052.1\| outer membrane protein X [Yersinia pseudotuberculosis IP 32953], gi\|515... gi\|25301832 - pir\|\|AC0306 probable outer membrane protein ompX [imported] - Yersinia pestis (strain CO92) gi\|16122727, gi\|... - gi\|218929595\|ref\|YP_002347470.1\| outer membrane protein X [Yersinia pestis CO92], gi\|16122727\|ref\|NP... gi\|165914379, gi... - gi\|89101983\|ref\|ZP_01174657.1\| COG3637: Opacity protein and related surface antigens [Yersinia pesti... gi\|108775910, gi... - gi\|229902598\|ref\|ZP_04517715.1\| putative outer membrane protein [Yersinia pestis Nepal516], gi\|22968...	149.0	[0..3]	[173..1]
gi\|30349724 - gi\|30349724\|gb\|AAP22174.1\| outer membrane protein X [Enterobacter aerogenes]	147.0	[0..3]	[173..1]
gi\|238546184, gi... - gi\|238893868\|ref\|YP_002918602.1\| outer membrane protein X [Klebsiella pneumoniae NTUH-K2044], gi\|238... gi\|1279830 - gi\|1279830\|gb\|AAA97932.1\| OmpK17 [Klebsiella pneumoniae] gi\|150954249, gi... - gi\|152969400\|ref\|YP_001334509.1\| outer membrane protein X [Klebsiella pneumoniae subsp. pneumoniae M...	143.0	[0..3]	[173..1]
gi\|229681578, gi... - gi\|229901649\|ref\|ZP_04516771.1\| attachment invasion locus protein [Yersinia pestis Nepal516], gi\|229...	141.0	[0..3]	[173..4]

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Predicted Domain #1

Region A:
Residues: [1-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMKKIACLS ALAAVLAFTA GTSVAATSTV TGGYAQSDAQ GQMNKMGGFN LKYRYEEDNS  60
   61 PLGVIGSFTY TEKSRTASSG DYNKNQYYGI TAGPAYRIND WASIYGVVGV GYGKFQTTEY 120
  121 PTYKHDTSDY GFSYGAGLQF NPMENVALDF SYEQSRIRSV DVGTWIAGVG YRF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.0
Match:	1ormA
Description:	Outer membrane protein X (OMPX)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits