YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|241372885, gi...
Organism:	Zymomonas mobilis subsp. mobilis ATCC 10988
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|241372885, gi....

Description	E-value	Query Range	Subject Range
gi\|78695632, gi\|... - gi\|78695632\|ref\|ZP_00860143.1\| heat shock protein [Bradyrhizobium sp. BTAi1], gi\|78516195\|gb\|EAP2949...	144.0	[0..1]	[94..3]
gi\|27353501, gi\|... - gi\|27380337\|ref\|NP_771866.1\| co-chaperonin GroES [Bradyrhizobium japonicum USDA 110], gi\|27353501\|db...	143.0	[0..1]	[94..3]
gi\|484348, gi\|152237 - pir\|\|JN0513 heat shock protein groES (clone Rhz C) - Rhizobium meliloti, gi\|152237\|gb\|AAA26286.1\| g...	142.0	[0..1]	[94..1]
CH11_BRAJA, CH10... - (P77828) 10 kDa chaperonin 1 (Protein Cpn10 1) (groES protein 1), 10 kDa chaperonin 1 OS=Bradyrhizob... CH101_BRADU - 10 kDa chaperonin 1 OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / US...	141.0	[0..1]	[94..1]
gi\|89352967, gi\|... - gi\|89358790\|ref\|ZP_01196612.1\| chaperonin, 10 kDa [Xanthobacter autotrophicus Py2], gi\|89352967\|gb\|E...	141.0	[0..1]	[95..1]
gi\|227818821, gi... - gi\|36959079\|gb\|AAQ87504.1\| 10 kDa chaperonin GroES [Rhizobium sp. NGR234], gi\|227818821\|ref\|YP_00282...	141.0	[0..1]	[94..1]
gi\|113879392, gi... - gi\|150396500\|ref\|YP_001326967.1\| chaperonin Cpn10 [Sinorhizobium medicae WSM419], gi\|150028015\|gb\|AB...	141.0	[0..1]	[94..1]
gi\|85697553, gi\|... - gi\|85715614\|ref\|ZP_01046594.1\| co-chaperonin GroES [Nitrobacter sp. Nb-311A], gi\|85697553\|gb\|EAQ3543...	141.0	[0..1]	[95..1]
gi\|68539305, gi\|... - gi\|98976023\|gb\|ABF52174.1\| chaperonin Cpn10 [Sphingopyxis alaskensis RB2256], gi\|68539305\|ref\|ZP_005...	141.0	[0..1]	[95..1]

Back

Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFRPLHDRV LVRRVAAEEK TAGGIIIPDT AKEKPQEGEV IAAGNGTHSE DGKVVPLDVK  60
   61 AGDRVLFGKW SGTEVRVDGE DLLIMKESDI LGIIS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.39794
Match:	1hx5A
Description:	Chaperonin-10 (GroES)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
chaperone binding	3.52404463833595	bayes_pls_golite062009
unfolded protein binding	2.30823619318536	bayes_pls_golite062009
binding	2.29520443217747	bayes_pls_golite062009
protein binding	1.35579823286173	bayes_pls_golite062009
catalytic activity	0.217171374336363	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: