YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|241909247, gi...
Organism:	Desulfovibrio vulgaris RCH1
Length:	424 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|241909247, gi....

Description	E-value	Query Range	Subject Range
SYS_DESVV - Serine--tRNA ligase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=serS PE=3 SV=1	0.0	[1..424]	[1..424]
gi\|67155739\|ref\|... - Seryl-tRNA synthetase, class IIa [Azotobacter vinelandii AvOP] gi\|67155739, gi\|... - gi\|67155739\|ref\|ZP_00417366.1\| Seryl-tRNA synthetase, class IIa [Azotobacter vinelandii AvOP], gi\|67...	0.0	[1..422]	[182..606]
SYS_PSEAE - Seryl-tRNA synthetase OS=Pseudomonas aeruginosa GN=serS PE=3 SV=1 SYS_PSEAE - Serine--tRNA ligase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) ... gi\|254235598, gi... - gi\|84320581\|ref\|ZP_00968954.1\| COG0172: Seryl-tRNA synthetase [Pseudomonas aeruginosa C3719], gi\|254... gi\|194552030, gi... - gi\|84326939\|ref\|ZP_00974963.1\| COG0172: Seryl-tRNA synthetase [Pseudomonas aeruginosa 2192], gi\|2542... SYS_PSEA8 - Serine--tRNA ligase OS=Pseudomonas aeruginosa (strain LESB58) GN=serS PE=3 SV=1 SYS_PSEAB - Serine--tRNA ligase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=serS PE=3 SV=1 gi\|107102134 - gi\|107102134\|ref\|ZP_01366052.1\| hypothetical protein PaerPA_01003183 [Pseudomonas aeruginosa PACS2]	0.0	[1..422]	[1..425]
SYS_PSEA7 - Serine--tRNA ligase OS=Pseudomonas aeruginosa (strain PA7) GN=serS PE=3 SV=1	0.0	[1..422]	[1..425]
SYS_DECAR - Serine--tRNA ligase OS=Dechloromonas aromatica (strain RCB) GN=serS PE=3 SV=1	0.0	[1..424]	[1..426]
SYS_ACTP2 - Serine--tRNA ligase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=serS PE=3 SV=1 gi\|32033510 - gi\|32033510\|ref\|ZP_00133837.1\| COG0172: Seryl-tRNA synthetase [Actinobacillus pleuropneumoniae serov...	0.0	[1..424]	[1..435]
SYS_METFK - Serine--tRNA ligase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=serS PE=3 ...	0.0	[1..424]	[1..430]
SYS_PSEPF - Serine--tRNA ligase OS=Pseudomonas fluorescens (strain Pf0-1) GN=serS PE=3 SV=1	0.0	[1..422]	[1..425]
gi\|251816747, gi... - gi\|253752458\|ref\|YP_003025599.1\| seryl-tRNA synthetase [Streptococcus suis SC84], gi\|251816747\|emb\|C... gi\|56684577 - gi\|56684577\|gb\|AAW21989.1\| SerS [Streptococcus suis] gi\|251820530, gi... - gi\|253754284\|ref\|YP_003027425.1\| seryl-tRNA synthetase [Streptococcus suis P1/7], gi\|251820530\|emb\|C...	0.0	[1..422]	[1..422]
gi\|221179032, gi... - gi\|221201182\|ref\|ZP_03574222.1\| seryl-tRNA synthetase [Burkholderia multivorans CGD2M], gi\|221179032... SYS_BURM1 - Serine--tRNA ligase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=serS PE=3 SV=1 gi\|221213643, gi... - gi\|221213643\|ref\|ZP_03586617.1\| seryl-tRNA synthetase [Burkholderia multivorans CGD1], gi\|221166432\|... SYS_BURCE - Serine--tRNA ligase OS=Burkholderia cepacia GN=serS PE=3 SV=1 gi\|221206364, gi... - gi\|221206364\|ref\|ZP_03579377.1\| seryl-tRNA synthetase [Burkholderia multivorans CGD2], gi\|221173673\|...	0.0	[1..424]	[1..428]

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Predicted Domain #1

Region A:
Residues: [1-424]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDLKLLQKN PEVVAKALAM RHSDIDIATF TTLDTRRRAL LTEVESLKSE RNKASAEVAK  60
   61 AKRAGEDASA LIERLGGVSE RIKALDLEAE AVKSEQNDWM LTIPNIPHES VPEGRDENDN 120
  121 VEVLRWGTPR AFSFTPREHW DIGVALGGLD FERAGKLAGS RFTVYWKWAA RLERALANYF 180
  181 LDTHISANGY TEVLPPFMVN RKTMTGTGQL PKFEEDLFRL ESWDYFLIPT AEVPLTNLHA 240
  241 DEILEEGDLP LGYTAQTPCF RSEAGSYGKD TRGLIRQHQF TKVEMVRFAH PERSFDELER 300
  301 MRGHAEALLQ NLGLPYRVIT LCSGDMGFSA TKTYDLEVWL PGQDKYREIS SCSNCGDFQA 360
  361 RRANIRFRPA GGGKPEFVHT LNGSGLAVGR TLVAVLENYQ QEDGSVIVPE VLRPYMGGLE 420
  421 RITA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	107.0
Match:	2dq3A
Description:	No description for 2dq3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits