YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|228916481, gi...
Organism:	Bacillus thuringiensis serovar pulsiensis BGSC 4CC1
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|228916481, gi....

Description	E-value	Query Range	Subject Range
RS16_LEUMM - 30S ribosomal protein S16 OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO...	1.0E-34	[1..89]	[1..89]
RS16_LACBA - 30S ribosomal protein S16 OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rpsP PE=3 SV=1	2.0E-34	[1..90]	[1..90]
RS16_LACPL - 30S ribosomal protein S16 OS=Lactobacillus plantarum GN=rpsP PE=3 SV=1 gi\|254556542, gi... - gi\|254556542\|ref\|YP_003062959.1\| 30S ribosomal protein S16 [Lactobacillus plantarum JDM1], gi\|254045... gi\|227895202, gi... - gi\|227895202\|ref\|ZP_04013007.1\| 30S ribosomal protein S16 [Lactobacillus plantarum subsp. plantarum ... RS16_LACPL - 30S ribosomal protein S16 OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=r...	4.0E-34	[1..90]	[1..90]
gi\|65321172, gi\|... - gi\|65321172\|ref\|ZP_00394131.1\| COG0228: Ribosomal protein S16 [Bacillus anthracis str. A2012], ref\|N...	1.0E-33	[1..90]	[1..90]
RS16_PEDPA - 30S ribosomal protein S16 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rpsP PE=3 SV=1	2.0E-33	[1..90]	[1..90]
gi\|254997576 - gi\|254997576\|dbj\|BAH88177.1\| 30S ribosomal protein S16 [Streptococcus mutans NN2025] RS16_STRMU - 30S ribosomal protein S16 OS=Streptococcus mutans GN=rpsP PE=3 SV=1 RS16_STRMU - 30S ribosomal protein S16 OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) GN=rpsP PE...	2.0E-33	[1..90]	[1..90]
RS16_LACLS - 30S ribosomal protein S16 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rpsP PE=3 SV=1	6.0E-33	[1..90]	[1..90]
RS16_LACGA - 30S ribosomal protein S16 OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243 / JCM 1131 / NCIMB... gi\|227521155, gi... - gi\|227521155\|ref\|ZP_03951204.1\| 30S ribosomal protein S16 [Lactobacillus gasseri JV-V03], gi\|2270942... RS16_LACJO - 30S ribosomal protein S16 OS=Lactobacillus johnsonii GN=rpsP PE=3 SV=1 gi\|238852593, gi... - gi\|238852593\|ref\|ZP_04643003.1\| ribosomal protein S16 [Lactobacillus gasseri 202-4], gi\|238834739\|gb... RS16_LACJO - 30S ribosomal protein S16 OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN=rpsP P... gi\|227890252, gi... - gi\|227890252\|ref\|ZP_04008057.1\| 30S ribosomal protein S16 [Lactobacillus johnsonii ATCC 33200], gi\|2...	8.0E-33	[1..90]	[1..90]
gi\|220708401, gi... - gi\|221087515\|ref\|ZP_03557052.1\| ribosomal protein S16 [Geobacillus sp. Y412MC61], gi\|220708401\|gb\|EE... gi\|229498130, gi... - gi\|229498130\|ref\|ZP_04391827.1\| ribosomal protein S16 [Geobacillus sp. Y412MC52], gi\|229330820\|gb\|EE... RS16_GEOKA - 30S ribosomal protein S16 OS=Geobacillus kaustophilus (strain HTA426) GN=rpsP PE=3 SV=1 RS16_GEOKA - 30S ribosomal protein S16 OS=Geobacillus kaustophilus GN=rpsP PE=3 SV=1	8.0E-33	[1..90]	[1..90]
gi\|221322994 - gi\|221322994\|ref\|ZP_03604288.1\| 30S ribosomal protein S16 [Bacillus subtilis subsp. subtilis str. SM... RS16_BACSU - 30S ribosomal protein S16 OS=Bacillus subtilis (strain 168) GN=rpsP PE=1 SV=3 gi\|221318723 - gi\|221318723\|ref\|ZP_03600017.1\| 30S ribosomal protein S16 [Bacillus subtilis subsp. subtilis str. JH... gi\|221313799 - gi\|221313799\|ref\|ZP_03595604.1\| 30S ribosomal protein S16 [Bacillus subtilis subsp. subtilis str. NC... RS16_BACSU - 30S ribosomal protein S16 OS=Bacillus subtilis GN=rpsP PE=1 SV=3	9.0E-33	[1..90]	[1..90]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVKIRLKRM GAKKTPFYRV VVADSRSPRD GRFIEEIGTY NPVAQPAEVK INEEAALKWL  60
   61 GNGAKPSDTV RNLFSNQGIM EKFHLSKQGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.0
Match:	2uu9P
Description:	No description for 2uu9P was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits