YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|228675646, gi...
Organism:	Bacillus cereus Rock1-15
Length:	207 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|228675646, gi....

Description	E-value	Query Range	Subject Range
RL4_GEOSE - 50S ribosomal protein L4 OS=Geobacillus stearothermophilus GN=rplD PE=1 SV=1	2.0E-79	[1..207]	[1..207]
RL4_GEOKA - 50S ribosomal protein L4 OS=Geobacillus kaustophilus (strain HTA426) GN=rplD PE=3 SV=1 gi\|220706749, gi... - gi\|221089323\|ref\|ZP_03558843.1\| ribosomal protein L4/L1e [Geobacillus sp. Y412MC61], gi\|220706749\|gb... RL4_GEOKA - 50S ribosomal protein L4 OS=Geobacillus kaustophilus GN=rplD PE=3 SV=1	7.0E-79	[1..207]	[1..207]
RL4_BACSK - 50S ribosomal protein L4 OS=Bacillus clausii (strain KSM-K16) GN=rplD PE=3 SV=1	4.0E-78	[1..207]	[1..207]
RL4_BACHD - 50S ribosomal protein L4 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9... RL4_BACHD - 50S ribosomal protein L4 OS=Bacillus halodurans GN=rplD PE=3 SV=1	8.0E-78	[1..207]	[1..207]
gi\|89100348, gi\|... - gi\|89100348\|ref\|ZP_01173213.1\| 50S ribosomal protein L4 [Bacillus sp. NRRL B-14911], gi\|89084969\|gb\|...	6.0E-76	[1..207]	[1..207]
RL4_EXIS2 - 50S ribosomal protein L4 OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=rpl...	1.0E-74	[1..207]	[1..207]
RL4_BACLD - 50S ribosomal protein L4 OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 122...	2.0E-74	[1..207]	[1..207]
RL4_ALKMQ - 50S ribosomal protein L4 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplD PE=3 SV=1	2.0E-73	[1..207]	[1..207]
gi\|221312250 - gi\|221312250\|ref\|ZP_03594055.1\| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str. NCI... gi\|221317184 - gi\|221317184\|ref\|ZP_03598478.1\| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str. JH6... gi\|221321447 - gi\|221321447\|ref\|ZP_03602741.1\| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str. SMY... RL4_BACSU - 50S ribosomal protein L4 OS=Bacillus subtilis (strain 168) GN=rplD PE=1 SV=1 RL4_BACSU - 50S ribosomal protein L4 OS=Bacillus subtilis GN=rplD PE=3 SV=1	2.0E-73	[1..207]	[1..207]
RL4_ALKOO - 50S ribosomal protein L4 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rplD PE=3 SV=1	4.0E-73	[1..207]	[1..207]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKVTVYNQT GSQVGEIELA EAIFGIEPNE AVLFEAVMMQ RASLRQGTHK VKTRSEVRGG  60
   61 GRKPWRQKGT GRARQGSIRS PQWRGGGTVF GPTPRSYAYK LPKKVRRLAI KSALATKVVE 120
  121 NNIVVLEDLV LNAPKTKDML AVLKGLTVEK KALIVTADAN ESVELSARNI PGVTVITADG 180
  181 VNVLDVLHHD KLIMTKAAVE KVEEVLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.0
Match:	1p85C
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.46714384821627	bayes_pls_golite062009
structural molecule activity	8.89019844429202	bayes_pls_golite062009
binding	1.20549540301208	bayes_pls_golite062009
protein binding	0.69049990447008	bayes_pls_golite062009
RNA binding	0.514741551458219	bayes_pls_golite062009
nucleic acid binding	0.491336126355036	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: