YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254991850
Organism:	Listeria monocytogenes FSL J2-064
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254991850.

Description	E-value	Query Range	Subject Range
gi\|221089326, gi... - gi\|221089326\|ref\|ZP_03558846.1\| ribosomal protein S19 [Geobacillus sp. Y412MC61], gi\|220706752\|gb\|EE... RS19_GEOKA - 30S ribosomal protein S19 OS=Geobacillus kaustophilus (strain HTA426) GN=rpsS PE=3 SV=1 RS19_GEOKA - 30S ribosomal protein S19 OS=Geobacillus kaustophilus GN=rpsS PE=3 SV=1	141.0	[0..1]	[92..1]
RS19_STAES - 30S ribosomal protein S19 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rpsS PE=3 SV=1 RS19_STAEQ - 30S ribosomal protein S19 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rpsS PE=3 SV=... RS19_STAHJ - 30S ribosomal protein S19 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpsS PE=3 SV=1 gi\|223042287, gi... - gi\|223042287\|ref\|ZP_03612336.1\| ribosomal protein S19 [Staphylococcus capitis SK14], gi\|222443950\|gb... RS19_STAEP - (Q8CRG4) 30S ribosomal protein S19	141.0	[0..1]	[92..1]
RS19_SYNP6 - 30S ribosomal protein S19 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsS ... gi\|2446894 - gi\|2446894\|dbj\|BAA22453.1\| 30S ribosomal protein S19 [Synechococcus sp.] RS19_SYNE7 - 30S ribosomal protein S19 OS=Synechococcus elongatus (strain PCC 7942) GN=rpsS PE=3 SV=1	141.0	[0..1]	[91..1]
gi\|67923587, gi\|... - gi\|67923587\|ref\|ZP_00517059.1\| Ribosomal protein S19, bacterial and organelle form [Crocosphaera wat...	140.0	[0..1]	[92..1]
RS19_BACHD - 30S ribosomal protein S19 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM ... RS19_BACHD - 30S ribosomal protein S19 OS=Bacillus halodurans GN=rpsS PE=3 SV=1	140.0	[0..1]	[92..1]
RS19_GEOSE - 30S ribosomal protein S19 OS=Geobacillus stearothermophilus GN=rpsS PE=1 SV=3	140.0	[0..1]	[92..1]
RS19_NOSS1 - 30S ribosomal protein S19 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpsS PE=3 SV=1 gi\|25294862 - pir\|\|AD2332 30S ribosomal protein S19 [imported] - Nostoc sp. (strain PCC 7120)	140.0	[0..1]	[92..1]
RS19_TRIEI - 30S ribosomal protein S19 OS=Trichodesmium erythraeum (strain IMS101) GN=rpsS PE=3 SV=1	139.0	[0..1]	[91..1]
RS19_BACLD - 30S ribosomal protein S19 OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12...	139.0	[0..1]	[92..1]
gi\|23010685 - gi\|23010685\|ref\|ZP_00051290.1\| COG0185: Ribosomal protein S19 [Magnetospirillum magnetotacticum MS-1...	139.0	[0..1]	[92..1]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRSLKKGPF VDDHLMKKVE AAAESEKKQV IKTWSRRSTI FPTFVGQTIA VYDGRKHVPV  60
   61 YVQEDMVGHK LGEFAPTRTY RGHAGDDKKT KR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	2gy9S
Description:	No description for 2gy9S was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.93798084434094	bayes_pls_golite062009
structural molecule activity	9.3625249805433	bayes_pls_golite062009
binding	1.31016553389632	bayes_pls_golite062009
protein binding	0.597909497479366	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: