YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|238901444, gi...
Organism:	Escherichia coli BW2952
Length:	403 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|238901444, gi....

Description	E-value	Query Range	Subject Range
ELAD_ECOLI, tr\|A... - Protein elaD - Escherichia coli (strain K12), Deubiquitinase OS=Escherichia coli (strain K12) GN=C30... ELAD_ECOLI - Protein elaD - Escherichia coli	694.0	[0..2]	[403..1]
gi\|195935650 - gi\|195935650\|ref\|ZP_03081032.1\| deubiquitinase [Escherichia coli O157:H7 str. EC4024] ELAD_ECO57 - Protease ElaD OS=Escherichia coli O157:H7 GN=elaD PE=3 SV=1 gi\|25358983, gi\|... - pir\|\|F85867 probable sulfatase/phosphatase elaD [imported] - Escherichia coli (strain O157:H7, subst... gi\|254593565, gi... - gi\|254794165\|ref\|YP_003079002.1\| predicted enzyme [Escherichia coli O157:H7 str. TW14359], gi\|254593... gi\|15802820, gi\|... - gi\|15802820\|ref\|NP_288847.1\| deubiquitinase [Escherichia coli O157:H7 EDL933], gi\|12516620\|gb\|AAG574... gi\|13362627, gi\|... - gi\|15832411\|ref\|NP_311184.1\| deubiquitinase [Escherichia coli O157:H7 str. Sakai], gi\|13362627\|dbj\|B...	660.0	[0..1]	[403..1]
SSEL_SALCH - Deubiquitinase sseL OS=Salmonella choleraesuis GN=sseL PE=3 SV=1 SSEL_SALCH - Deubiquitinase SseL OS=Salmonella choleraesuis (strain SC-B67) GN=sseL PE=3 SV=1 SSEL_SALCH - Deubiquitinase sseL OS=Salmonella choleraesuis GN=sseL PE=3 SV=1	516.0	[0..2]	[363..1]
gi\|16765614, gi\|... - gi\|16765614\|ref\|NP_461229.1\| deubiquitinase [Salmonella typhimurium LT2], gi\|16420826\|gb\|AAL21188.1\|... lcl\|NC_016856.1_... - [gene=sseL] [protein=deubiquitinase] [protein_id=YP_005238360.1] [location=2446348..2447301]	491.0	[0..27]	[363..1]
gi\|29141091, gi\|... - gi\|29141091\|ref\|NP_804433.1\| deubiquitinase [Salmonella enterica subsp. enterica serovar Typhi str. ...	484.0	[0..27]	[363..1]
gi\|25512758, gi\|... - gi\|25512758\|pir\|\|AF0792 conserved hypothetical protein STY2517 [imported] - Salmonella enterica subs... gi\|16761214 - gi\|16761214\|ref\|NP_456831.1\| deubiquitinase [Salmonella enterica subsp. enterica serovar Typhi str. ...	484.0	[0..27]	[363..1]
gi\|197361748, gi... - gi\|197361748\|ref\|YP_002141384.1\| deubiquitinase [Salmonella enterica subsp. enterica serovar Paratyp... gi\|56412815, gi\|... - gi\|56412815\|ref\|YP_149890.1\| deubiquitinase [Salmonella enterica subsp. enterica serovar Paratyphi A...	479.0	[0..27]	[363..1]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMVTVVSNYC QLSQTQLSQT FAEKFTVTEE LLQSLKKTAL SGDEESIELL HNIALGYDKF  60
   61 GKEAEDILYH IVRTPTNETL SIIRLIKNAC LKLYNLAHIA TNSPLKSH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [109-403]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSDDLLFKKL FSPSKLMTII GDEIPLISEK QSLSKVLLND ENNELSDGTN FWDKNRQLTT  60
   61 DEIACYLQKI AANAKNTQVN YPTGLYVPYS TRTHLEDALN ENIKSDPSWP NEVQLFPINT 120
  121 GGHWILVSLQ KIVNKKNNKL QIKCVIFNSL RALGYDKENS LKRVINSFNS ELMGEMSNNN 180
  181 IKVHLNEPEI IFLHADLQQY LSQSCGAFVC MAAQEVIEQR ESNSDSAPYT LLKNHADRFK 240
  241 KYSAEEQYEI DFQHRLANRN CYLDKYGDAN INHYYRNLEI KHSQPKNRAS GKRVS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.0
Match:	1euvA
Description:	Ulp1 protease C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits