YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|238912987
Organism:	Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191
Length:	443 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|238912987.

Description	E-value	Query Range	Subject Range
PEPQ_ECOL6 - Xaa-Pro dipeptidase OS=Escherichia coli O6 GN=pepQ PE=3 SV=1 sp\|B7UNH5\|PEPQ_ECO27 - Xaa-Pro dipeptidase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=pepQ PE=3 SV=1 PEPQ_ECOK1 - Xaa-Pro dipeptidase OS=Escherichia coli O1:K1 / APEC GN=pepQ PE=3 SV=1 PEPQ_ECOL5 - Xaa-Pro dipeptidase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=pepQ PE=3 SV=1 PEPQ_ECOL6 - Xaa-Pro dipeptidase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=pepQ PE=3 SV=1 PEPQ_ECOSM - Xaa-Pro dipeptidase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=pepQ PE=3 SV=1 PEPQ_ECO27 - Xaa-Pro dipeptidase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=pepQ PE=3 SV=1 gi\|237702880, gi... - gi\|237702880\|ref\|ZP_04533361.1\| xaa-Pro dipeptidase [Escherichia sp. 3_2_53FAA], gi\|226903051\|gb\|EEH... gi\|191173907, gi... - gi\|75237620\|ref\|ZP_00721640.1\| COG0006: Xaa-Pro aminopeptidase [Escherichia coli F11], gi\|191173907\|... PEPQ_ECO45 - Xaa-Pro dipeptidase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=pepQ PE=3 SV=1 gi\|227888541, gi... - gi\|227888541\|ref\|ZP_04006346.1\| proline dipeptidase [Escherichia coli 83972], gi\|227834380\|gb\|EEJ448... PEPQ_ECOUT - Xaa-Pro dipeptidase OS=Escherichia coli (strain UTI89 / UPEC) GN=pepQ PE=3 SV=1	1.0E-83	[1..443]	[1..443]
gi\|170769876, gi... - gi\|170769876\|ref\|ZP_02904329.1\| Xaa-Pro dipeptidase [Escherichia albertii TW07627], gi\|170121314\|gb\|... PEPQ_ECODH - Xaa-Pro dipeptidase OS=Escherichia coli (strain K12 / DH10B) GN=pepQ PE=3 SV=1 EG10698 - proline dipeptidase / Proline dipeptidase; prolidase; Xaa-Pro dipeptidase PEPQ_ECOLC - Xaa-Pro dipeptidase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=pepQ PE=3 SV=1 PEPQ_ECOLU - Xaa-Pro dipeptidase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=pepQ PE=3 SV=1 PEPQ_ECO55 - Xaa-Pro dipeptidase OS=Escherichia coli (strain 55989 / EAEC) GN=pepQ PE=3 SV=1 gi\|194412715, gi... - gi\|75209528\|ref\|ZP_00709749.1\| COG0006: Xaa-Pro aminopeptidase [Escherichia coli B171], gi\|194429203... PEPQ_ECOBW - Xaa-Pro dipeptidase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=pepQ PE=3 SV=1 gi\|191166121, gi... - gi\|75230806\|ref\|ZP_00717269.1\| COG0006: Xaa-Pro aminopeptidase [Escherichia coli B7A], gi\|191166121\|... gi\|251787117, gi... - gi\|251787117\|ref\|YP_003001421.1\| hypothetical protein B21_03687 [Escherichia coli BL21], gi\|24237939... PEPQ_ECOLI - Xaa-Pro dipeptidase (EC 3.4.13.9) (X-Pro dipeptidase) (Proline dipeptidase) (Prolidase) (Imidodipept... gi\|192926643, gi... - gi\|75256231\|ref\|ZP_00727909.1\| COG0006: Xaa-Pro aminopeptidase [Escherichia coli E22], gi\|193065676\|... gi\|253326558, gi... - gi\|254290554\|ref\|YP_003056302.1\| proline dipeptidase [Escherichia coli BL21(DE3)], gi\|253979861\|gb\|A... gi\|85676206, gi\|... - gi\|89110175\|ref\|AP_003955.1\| proline dipeptidase [Escherichia coli str. K-12 substr. W3110], gi\|8567... gi\|226838750, gi... - gi\|254039059\|ref\|ZP_04873110.1\| xaa-Pro dipeptidase [Escherichia sp. 1_1_43], gi\|226838750\|gb\|EEH707... gi\|253975705, gi... - gi\|254163804\|ref\|YP_003046912.1\| proline dipeptidase [Escherichia coli B str. REL606], gi\|253975705\|... EG10698 - proline dipeptidase / Proline dipeptidase; prolidase; Xaa-Pro dipeptidase gi\|83585894, gi\|... - gi\|83585894\|ref\|ZP_00924533.1\| COG0006: Xaa-Pro aminopeptidase [Escherichia coli 101-1], gi\|19443861... PEPQ_ECO24 - Xaa-Pro dipeptidase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=pepQ PE=3 SV=1 PEPQ_ECOHS - Xaa-Pro dipeptidase OS=Escherichia coli O9:H4 (strain HS) GN=pepQ PE=3 SV=1 gi\|124530418, gi... - gi\|124530418\|ref\|ZP_01701076.1\| peptidase M24 [Escherichia coli B], gi\|124499184\|gb\|EAY46677.1\| pept...	2.0E-83	[1..443]	[1..443]
PEPQ_SHISS - Xaa-Pro dipeptidase OS=Shigella sonnei (strain Ss046) GN=pepQ PE=3 SV=1 gi\|75238295, gi\|... - gi\|75238295\|ref\|ZP_00722294.1\| COG0006: Xaa-Pro aminopeptidase [Escherichia coli E110019], gi\|193068...	2.0E-83	[1..443]	[1..443]
gi\|42358 - gi\|42358\|emb\|CAA38501.1\| unnamed protein product [Escherichia coli]	3.0E-83	[1..438]	[1..438]
gi\|188490193, gi... - gi\|75512600\|ref\|ZP_00735112.1\| COG0006: Xaa-Pro aminopeptidase [Escherichia coli 53638], gi\|18849499...	6.0E-83	[1..443]	[1..443]
PEPQ_SHIF8 - Xaa-Pro dipeptidase OS=Shigella flexneri serotype 5b (strain 8401) GN=pepQ PE=3 SV=1	8.0E-83	[1..443]	[1..443]
PEPQ_SHIB3 - Xaa-Pro dipeptidase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=pepQ PE=3 SV=1 PEPQ_SHIBS - Xaa-Pro dipeptidase OS=Shigella boydii serotype 4 (strain Sb227) GN=pepQ PE=3 SV=1	8.0E-83	[1..443]	[1..443]
gi\|24115141, gi\|... - gi\|24115141\|ref\|NP_709651.1\| proline dipeptidase [Shigella flexneri 2a str. 301], gi\|24054415\|gb\|AAN... PEPQ_SHIFL - Xaa-Pro dipeptidase OS=Shigella flexneri GN=pepQ PE=3 SV=1	8.0E-83	[1..443]	[1..443]
gi\|25289699, gi\|... - pir\|\|G91225 proline dipeptidase [imported] - Escherichia coli (strain O157:H7, substrain RIMD 050995... gi\|15804437, gi\|... - gi\|15804437\|ref\|NP_290477.1\| Xaa-Pro dipeptidase [Escherichia coli O157:H7 EDL933], gi\|12518725\|gb\|A... PEPQ_ECO57 - Xaa-Pro dipeptidase OS=Escherichia coli O157:H7 GN=pepQ PE=3 SV=1 gi\|168763976, gi... - gi\|189365975\|gb\|EDU84391.1\| Xaa-Pro dipeptidase [Escherichia coli O157:H7 str. EC4501], gi\|168763976... gi\|168753748, gi... - gi\|189359337\|gb\|EDU77756.1\| Xaa-Pro dipeptidase [Escherichia coli O157:H7 str. EC4401], gi\|168753748... gi\|168750337, gi... - gi\|188015434\|gb\|EDU53556.1\| Xaa-Pro dipeptidase [Escherichia coli O157:H7 str. EC4113], gi\|168750337... gi\|254595243, gi... - gi\|254795843\|ref\|YP_003080680.1\| proline dipeptidase [Escherichia coli O157:H7 str. TW14359], gi\|254... gi\|217322472, gi... - gi\|217326251\|ref\|ZP_03442335.1\| Xaa-Pro dipeptidase [Escherichia coli O157:H7 str. TW14588], gi\|2173... PEPQ_ECO5E - Xaa-Pro dipeptidase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=pepQ PE=3 SV=1 gi\|208740577, gi... - gi\|208820454\|ref\|ZP_03260774.1\| Xaa-Pro dipeptidase [Escherichia coli O157:H7 str. EC4042], gi\|20874... gi\|13364251, gi\|... - gi\|15834029\|ref\|NP_312802.1\| proline dipeptidase [Escherichia coli O157:H7 str. Sakai], gi\|13364251\|... gi\|168786688, gi... - gi\|189373246\|gb\|EDU91662.1\| Xaa-Pro dipeptidase [Escherichia coli O157:H7 str. EC869], gi\|168786688\|... gi\|168780750, gi... - gi\|189001550\|gb\|EDU70536.1\| Xaa-Pro dipeptidase [Escherichia coli O157:H7 str. EC4076], gi\|168780750... gi\|168775598, gi... - gi\|187768898\|gb\|EDU32742.1\| Xaa-Pro dipeptidase [Escherichia coli O157:H7 str. EC4196], gi\|168775598... gi\|189362573, gi... - gi\|189362573\|gb\|EDU80992.1\| Xaa-Pro dipeptidase [Escherichia coli O157:H7 str. EC4486], gi\|168768132... gi\|208813783, gi... - gi\|208813783\|ref\|ZP_03255112.1\| Xaa-Pro dipeptidase [Escherichia coli O157:H7 str. EC4045], gi\|20873... gi\|208809719, gi... - gi\|208809719\|ref\|ZP_03252056.1\| Xaa-Pro dipeptidase [Escherichia coli O157:H7 str. EC4206], gi\|20872... gi\|195938137 - gi\|195938137\|ref\|ZP_03083519.1\| proline dipeptidase [Escherichia coli O157:H7 str. EC4024] gi\|189376678, gi... - gi\|189376678\|gb\|EDU95094.1\| Xaa-Pro dipeptidase [Escherichia coli O157:H7 str. EC508], gi\|168801085\|...	1.0E-82	[1..443]	[1..443]

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Predicted Domain #1

Region A:
Residues: [1-443]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESLAALYKN HIVTLQERTR DVLARFKLDA LLIHSGELFN VFLDDHPYPF KVNPQFKAWV  60
   61 PVTQVPNCWL LVDGVNKPKL WFYLPVDYWH NVEPLPTSFW TEEVEVVALP KADGIGSQLP 120
  121 AARGNIGYIG PVPERALQLD IAASNINPKG VIDYLHYYRA YKTDYELACM REAQKMAVSG 180
  181 HRAAEEAFRS GMSEFDINLA YLTATGHRDT DVPYSNIVAL NEHAAVLHYT KLDHQAPSEM 240
  241 RSFLLDAGAE YNGYAADLTR TWSAKSDNDY AHLVKDVNDE QLALIATMKA GVSYVDYHIQ 300
  301 FHQRIAKLLR KHQIITDMSE EAMVENDLTG PFMPHGIGHP LGLQVHDVAG FMQDDSGTHL 360
  361 AAPSKYPYLR CTRVLQPRMV LTIEPGIYFI ESLLAPWREG PFSKHFNWQK IEALKPFGGI 420
  421 RIEDNVVIHE NGVENMTRDL KLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.69897
Match:	2iw2A
Description:	No description for 2iw2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits