YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229335121, gi...
Organism:	Vibrio cholerae 12129(1)
Length:	177 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229335121, gi....

Description	E-value	Query Range	Subject Range
RL6_GEOSE - 50S ribosomal protein L6 OS=Geobacillus stearothermophilus GN=rplF PE=1 SV=2 RL6_GEOKA - 50S ribosomal protein L6 OS=Geobacillus kaustophilus (strain HTA426) GN=rplF PE=3 SV=1 RL6_GEOKA - 50S ribosomal protein L6 OS=Geobacillus kaustophilus GN=rplF PE=3 SV=1 gi\|221089337, gi... - gi\|221089337\|ref\|ZP_03558857.1\| ribosomal protein L6 [Geobacillus sp. Y412MC61], gi\|220706763\|gb\|EED... gi\|229500490, gi... - gi\|229500490\|ref\|ZP_04394151.1\| ribosomal protein L6 [Geobacillus sp. Y412MC52], gi\|229328607\|gb\|EEN...	249.0	[0..1]	[175..1]
RL6_THICR - 50S ribosomal protein L6 OS=Thiomicrospira crunogena (strain XCL-2) GN=rplF PE=3 SV=1	247.0	[0..1]	[177..1]
gi\|143419 - gi\|143419\|gb\|AAA22700.1\| ribosomal protein L6 [Geobacillus stearothermophilus]	246.0	[0..1]	[175..1]
RL6_MANSM - 50S ribosomal protein L6 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rplF PE=3 SV=1	246.0	[0..1]	[177..1]
RL6_PSEPF - 50S ribosomal protein L6 OS=Pseudomonas fluorescens (strain Pf0-1) GN=rplF PE=3 SV=1	246.0	[0..1]	[177..1]
RL6_PSEF5 - 50S ribosomal protein L6 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rplF PE=3 SV=1	246.0	[0..1]	[177..1]
RL6_MARHV - 50S ribosomal protein L6 OS=Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / DSM 11845 / VT8...	245.0	[0..1]	[177..1]
tr\|I7BCL8\|I7BCL8... - 50S ribosomal protein L6 OS=Pseudomonas putida (strain DOT-T1E) GN=rplF PE=3 SV=1 RL6_PSEPK - 50S ribosomal protein L6 OS=Pseudomonas putida (strain KT2440) GN=rplF PE=3 SV=1 RL6_PSEP1 - 50S ribosomal protein L6 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rplF PE=3 SV=1 RL6_PSEPG - 50S ribosomal protein L6 OS=Pseudomonas putida (strain GB-1) GN=rplF PE=3 SV=1 tr\|E4REZ0\|E4REZ0... - 50S ribosomal protein L6 OS=Pseudomonas putida (strain BIRD-1) GN=rplF PE=3 SV=1	244.0	[0..1]	[177..1]

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Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRVAKAPVA IPAGVEVKLN GQEITIKGAK GELTRVFHNG VVIAQEDNQL TFGPREGVAN  60
   61 AWAQAGTARA LVKNMVVGVT EGFTKKLVLK GVGYRAAMKG NAVGLTLGFS HPVEHELPAG 120
  121 VKAECPSQTE IVLTGCDKQV VGQVAADIRS YRAPEPYKGK GIRYADENVR SKEAKKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.69897
Match:	1vs6G
Description:	No description for 1vs6G was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.94614353072897	bayes_pls_golite062009
structural molecule activity	9.3691467221987	bayes_pls_golite062009
binding	1.17169736942297	bayes_pls_golite062009
protein binding	0.574304313407193	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: