YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|238910568
Organism:	Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191
Length:	114 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|238910568.

Description	E-value	Query Range	Subject Range
gi\|227836298, gi... - gi\|227886725\|ref\|ZP_04004530.1\| Ytfp protein [Escherichia coli 83972], gi\|227836298\|gb\|EEJ46764.1\| Y... gi\|89110942, gi\|... - gi\|89110942\|ref\|AP_004722.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|226901811, gi... - gi\|237703899\|ref\|ZP_04534380.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|238860575, gi... - gi\|238903328\|ref\|YP_002929124.1\| hypothetical protein BWG_3933 [Escherichia coli BW2952], gi\|2388605... gi\|251787475, gi... - gi\|251787475\|ref\|YP_003001779.1\| hypothetical protein B21_04057 [Escherichia coli BL21], gi\|24237974... gi\|253775149, gi... - gi\|253980212\|gb\|ACT45882.1\| hypothetical protein ECD_04093 [Escherichia coli BL21(DE3)], gi\|25377514... gi\|254037242, gi... - gi\|254037242\|ref\|ZP_04871319.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22684034... gi\|254796243, gi... - gi\|254796243\|ref\|YP_003081080.1\| hypothetical protein ECSP_5324 [Escherichia coli O157:H7 str. TW143... gi\|75235467, gi\|... - gi\|75235467\|ref\|ZP_00719675.1\| COG2105: Uncharacterized conserved protein [Escherichia coli E110019]... gi\|110346179, gi... - gi\|110644587\|ref\|YP_672317.1\| hypothetical protein ECP_4475 [Escherichia coli 536], gi\|110346179\|gb\|... gi\|253976056 - gi\|253976056\|gb\|ACT41727.1\| hypothetical protein ECB_04093 [Escherichia coli B str. REL606] gi\|75242386, gi\|... - gi\|75242386\|ref\|ZP_00726148.1\| COG2105: Uncharacterized conserved protein [Escherichia coli F11], gi... gi\|110808032, gi... - gi\|110808032\|ref\|YP_691552.1\| hypothetical protein SFV_4266 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|75212221, gi\|... - gi\|75212221\|ref\|ZP_00712261.1\| COG2105: Uncharacterized conserved protein [Escherichia coli B171], g... gi\|75229597, gi\|... - gi\|75229597\|ref\|ZP_00716136.1\| COG2105: Uncharacterized conserved protein [Escherichia coli B7A], gi... gi\|74314703, gi\|... - gi\|74314703\|ref\|YP_313122.1\| hypothetical protein SSON_4407 [Shigella sonnei Ss046], gi\|73858180\|gb\|... gi\|81243630, gi\|... - gi\|82779482\|ref\|YP_405831.1\| hypothetical protein SDY_4459 [Shigella dysenteriae Sd197], gi\|81243630... gi\|75258326, gi\|... - gi\|75258326\|ref\|ZP_00729757.1\| COG2105: Uncharacterized conserved protein [Escherichia coli E22], gi... gi\|91075353, gi\|... - gi\|91213779\|ref\|YP_543765.1\| hypothetical protein UTI89_C4830 [Escherichia coli UTI89], gi\|91075353\|... gi\|75515463, gi\|... - gi\|75515463\|ref\|ZP_00737620.1\| COG2105: Uncharacterized conserved protein [Escherichia coli 53638], ... gi\|13364677, gi\|... - gi\|15834454\|ref\|NP_313227.1\| hypothetical protein ECs5200 [Escherichia coli O157:H7 str. Sakai], gi\|... YTFP_SHIFL - Gamma-glutamylcyclotransferase family protein YtfP OS=Shigella flexneri GN=ytfP PE=3 SV=1 gi\|24054786, gi\|... - gi\|24115466\|ref\|NP_709976.1\| hypothetical protein SF4265 [Shigella flexneri 2a str. 301], gi\|2405478... YTFP_ECOL6 - Gamma-glutamylcyclotransferase family protein YtfP OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 7... gi\|30065486, gi\|... - gi\|30065486\|ref\|NP_839657.1\| hypothetical protein S4529 [Shigella flexneri 2a str. 2457T], gi\|300437... YTFP_ECO57 - Gamma-glutamylcyclotransferase family protein YtfP OS=Escherichia coli O157:H7 GN=ytfP PE=3 SV=1 gi\|157079094, gi... - gi\|75188937\|ref\|ZP_00702204.1\| COG2105: Uncharacterized conserved protein [Escherichia coli E24377A]... EG12516 - GGCT-like protein / Gamma-glutamyl cyclotransferase (GGCT) domain protein, function unknown gi\|75198075, gi\|... - gi\|75198075\|ref\|ZP_00708145.1\| COG2105: Uncharacterized conserved protein [Escherichia coli HS], gi\|... gi\|15804813, gi\|... - gi\|15804813\|ref\|NP_290854.1\| hypothetical protein Z5833 [Escherichia coli O157:H7 EDL933], gi\|125192... gi\|194417867, gi... - gi\|83569407\|ref\|ZP_00920861.1\| COG2105: Uncharacterized conserved protein [Shigella dysenteriae 1012... gi\|194437840, gi... - gi\|83586745\|ref\|ZP_00925377.1\| COG2105: Uncharacterized conserved protein [Escherichia coli 101-1], ... gi\|169756691, gi... - gi\|170021763\|ref\|YP_001726717.1\| AIG2 family protein [Escherichia coli ATCC 8739], gi\|169756691\|gb\|A... gi\|189379560, gi... - gi\|189379560\|gb\|EDU97976.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|170520655, gi... - gi\|170682937\|ref\|YP_001746625.1\| hypothetical protein EcSMS35_4701 [Escherichia coli SMS-3-5], gi\|17... gi\|170083666, gi... - gi\|170083666\|ref\|YP_001732986.1\| hypothetical protein ECDH10B_4417 [Escherichia coli str. K-12 subst... gi\|208808635, gi... - gi\|208808635\|ref\|ZP_03250972.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|195937249 - gi\|195937249\|ref\|ZP_03082631.1\| hypothetical protein EscherichcoliO157_12475 [Escherichia coli O157:... gi\|208739423, gi... - gi\|208819300\|ref\|ZP_03259620.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|208812692, gi... - gi\|208812692\|ref\|ZP_03254021.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|188014841, gi... - gi\|188014841\|gb\|EDU52963.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|168760470, gi... - gi\|189368956\|gb\|EDU87372.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|168754798, gi... - gi\|189357882\|gb\|EDU76301.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|187770202, gi... - gi\|187770202\|gb\|EDU34046.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168766507, gi... - gi\|189363970\|gb\|EDU82389.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|168784865, gi... - gi\|189374827\|gb\|EDU93243.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|188999750, gi... - gi\|188999750\|gb\|EDU68736.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|218434932, gi... - gi\|218707835\|ref\|YP_002415354.1\| hypothetical protein ECUMN_4758 [Escherichia coli UMN026], gi\|21843... gi\|218702925, gi... - gi\|218702925\|ref\|YP_002410554.1\| hypothetical protein ECIAI39_4693 [Escherichia coli IAI39], gi\|2183... gi\|117626572, gi... - gi\|117626572\|ref\|YP_859895.1\| hypothetical protein APECO1_2166 [Escherichia coli APEC O1], gi\|115515... gi\|124500730, gi... - gi\|124528288\|ref\|ZP_01699612.1\| protein of unknown function UPF0131 [Escherichia coli B], gi\|1245007... gi\|209921719, gi... - gi\|209921719\|ref\|YP_002295803.1\| hypothetical protein ECSE_4528 [Escherichia coli SE11], gi\|20991497... gi\|209160558, gi... - gi\|209399158\|ref\|YP_002273766.1\| hypothetical protein ECH74115_5740 [Escherichia coli O157:H7 str. E... gi\|217322208, gi... - gi\|217325987\|ref\|ZP_03442071.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|215489571, gi... - gi\|215489571\|ref\|YP_002332002.1\| hypothetical protein E2348C_4552 [Escherichia coli O127:H6 str. E23... gi\|218363543, gi... - gi\|218556774\|ref\|YP_002389688.1\| hypothetical protein ECIAI1_4455 [Escherichia coli IAI1], gi\|218363... gi\|218359060, gi... - gi\|218551518\|ref\|YP_002385310.1\| hypothetical protein EFER_4302 [Escherichia fergusonii ATCC 35469],... gi\|218697974, gi... - gi\|218697974\|ref\|YP_002405641.1\| hypothetical protein EC55989_4781 [Escherichia coli 55989], gi\|2183... gi\|218430177, gi... - gi\|218692613\|ref\|YP_002400825.1\| hypothetical protein ECED1_5080 [Escherichia coli ED1a], gi\|2184301... YTFP_ECOL6 - Gamma-glutamylcyclotransferase family protein ytfP OS=Escherichia coli O6 GN=ytfP PE=3 SV=1 EG12516 - GGCT-like protein / Gamma-glutamyl cyclotransferase (GGCT) domain protein, function unknown YTFP_ECOLI - UPF0131 protein ytfP - Escherichia coli	153.0	[0..1]	[113..1]
gi\|81247938, gi\|... - gi\|82546527\|ref\|YP_410474.1\| hypothetical protein SBO_4221 [Shigella boydii Sb227], gi\|81247938\|gb\|A... gi\|187732144, gi... - gi\|75179326\|ref\|ZP_00699330.1\| COG2105: Uncharacterized conserved protein [Shigella boydii BS512], g...	153.0	[0..1]	[113..1]
gi\|58177343 - gi\|58177343\|pdb\|1XHS\|A Chain A, Solution Nmr Structure Of Protein Ytfp From Escherichia Coli. Northe...	153.0	[0..1]	[113..1]
gi\|238787567, gi... - gi\|77973991\|ref\|ZP_00829534.1\| COG2105: Uncharacterized conserved protein [Yersinia frederiksenii AT...	146.0	[0..1]	[113..1]
gi\|77961843 - gi\|77961843\|ref\|ZP_00825672.1\| COG2105: Uncharacterized conserved protein [Yersinia mollaretii ATCC ...	145.0	[0..1]	[113..1]
gi\|75854567, gi\|... - gi\|75854567\|ref\|ZP_00762253.1\| COG2105: Uncharacterized conserved protein [Vibrio sp. Ex25], gi\|1161...	144.0	[0..3]	[110..5]
gi\|77958765 - gi\|77958765\|ref\|ZP_00822793.1\| COG2105: Uncharacterized conserved protein [Yersinia bercovieri ATCC ...	144.0	[0..1]	[113..1]
gi\|37528371, gi\|... - gi\|37528371\|ref\|NP_931716.1\| hypothetical protein plu4552 [Photorhabdus luminescens subsp. laumondii...	144.0	[0..1]	[112..1]
gi\|165937494, gi... - gi\|89104091\|ref\|ZP_01176645.1\| COG2105: Uncharacterized conserved protein [Yersinia pestis biovar Or... gi\|77634764, gi\|... - gi\|77634764\|ref\|ZP_00796858.1\| COG2105: Uncharacterized conserved protein [Yersinia pestis Angola], ... gi\|108806070, gi... - gi\|108806070\|ref\|YP_649986.1\| hypothetical protein YPA_0072 [Yersinia pestis Antiqua], gi\|108777983\|... gi\|153950488, gi... - gi\|77631452\|ref\|ZP_00794038.1\| COG2105: Uncharacterized conserved protein [Yersinia pseudotuberculos... gi\|229679672, gi... - gi\|229903902\|ref\|ZP_04519015.1\| conserved protein [Yersinia pestis Nepal516], gi\|229679672\|gb\|EEO757... gi\|229695542, gi... - gi\|229839176\|ref\|ZP_04459335.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|229700443, gi... - gi\|229896665\|ref\|ZP_04511832.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229700443\|gb\|EEO... gi\|229687232, gi... - gi\|229899740\|ref\|ZP_04514881.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... Q66F86\|Q66F86_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|165989764, gi... - gi\|166011380\|ref\|ZP_02232278.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|165919860, gi... - gi\|165928173\|ref\|ZP_02224005.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167049324, gi... - gi\|167401299\|ref\|ZP_02306799.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166204786, gi... - gi\|166213991\|ref\|ZP_02240026.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|22124576, gi\|... - gi\|22124576\|ref\|NP_667999.1\| hypothetical protein y0662 [Yersinia pestis KIM], gi\|21957377\|gb\|AAM842... gi\|167423376, gi... - gi\|167423376\|ref\|ZP_02315129.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|25351290 - pir\|\|AC0428 conserved hypothetical protein YPO3522 [imported] - Yersinia pestis (strain CO92) gi\|167420796, gi... - gi\|167420796\|ref\|ZP_02312549.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|51594806, gi\|... - gi\|51594806\|ref\|YP_068997.1\| hypothetical protein YPTB0454 [Yersinia pseudotuberculosis IP 32953], g... gi\|45435272, gi\|... - gi\|45440415\|ref\|NP_991954.1\| hypothetical protein YP_0561 [Yersinia pestis biovar Microtus str. 9100... gi\|115349147, gi... - gi\|218930536\|ref\|YP_002348411.1\| hypothetical protein YPO3522 [Yersinia pestis CO92], gi\|16123668\|re... gi\|153997299, gi... - gi\|153997299\|ref\|ZP_02022399.1\| hypothetical protein YPE_3743 [Yersinia pestis CA88-4125], gi\|149288... gi\|145600818, gi... - gi\|145600818\|ref\|YP_001164894.1\| hypothetical protein YPDSF_3571 [Yersinia pestis Pestoides F], gi\|1... gi\|170025983, gi... - gi\|170025983\|ref\|YP_001722488.1\| AIG2 family protein [Yersinia pseudotuberculosis YPIII], gi\|1697525... gi\|167469958 - gi\|167469958\|ref\|ZP_02334662.1\| hypothetical protein YpesF_19204 [Yersinia pestis FV-1] gi\|186893815, gi... - gi\|186893815\|ref\|YP_001870927.1\| AIG2 family protein [Yersinia pseudotuberculosis PB1/+], gi\|1866968...	143.0	[0..1]	[113..1]
gi\|238792994, gi... - gi\|77977607\|ref\|ZP_00833051.1\| COG2105: Uncharacterized conserved protein [Yersinia intermedia ATCC ...	143.0	[0..1]	[113..1]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIFVYGSLR QKQGNSHWMT NAQLLGDYRI DNYQLYSLGH YPGAVPGNGA VYGEVYRIDN  60
   61 ATLAELDALR TRGGEYARQL IQTPYGSAWM YVYQRPVDGL TLIESGDWLD RNQP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.0
Match:	1xhsA
Description:	Solution structure of the hypothetical protein ytfP from Escherichia coli. Northeast Structural Genomics target ER111.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits