YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|253772955, gi...
Organism:	Escherichia coli BL21(DE3)
Length:	105 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|253772955, gi....

Description	E-value	Query Range	Subject Range
gi\|24052532, gi\|... - gi\|24113496\|ref\|NP_708006.1\| hypothetical protein SF2187 [Shigella flexneri 2a str. 301], gi\|2405253...	195.0	[0..1]	[105..1]
gi\|82543483, gi\|... - gi\|82543483\|ref\|YP_407430.1\| hypothetical protein SBO_0939 [Shigella boydii Sb227], gi\|81244894\|gb\|A...	187.0	[0..1]	[105..1]
gi\|168750102, gi... - gi\|188015626\|gb\|EDU53748.1\| hypothetical protein ECH7EC4113_5387 [Escherichia coli O157:H7 str. EC41... gi\|189356544, gi... - gi\|189356544\|gb\|EDU74963.1\| hypothetical protein ECH7EC4401_4761 [Escherichia coli O157:H7 str. EC44... gi\|168761866, gi... - gi\|189367801\|gb\|EDU86217.1\| hypothetical protein ECH7EC4501_2449 [Escherichia coli O157:H7 str. EC45... gi\|25391052, gi\|... - pir\|\|A85840 hypothetical protein yehK [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15832180, gi\|... - gi\|15832180\|ref\|NP_310953.1\| hypothetical protein ECs2926 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|15802599, gi\|... - gi\|15802599\|ref\|NP_288626.1\| hypothetical protein Z3288 [Escherichia coli O157:H7 EDL933], gi\|125163... gi\|15832180, gi\|... - gi\|15832180\|ref\|NP_310953.1\| hypothetical protein ECs2926 [Escherichia coli O157:H7], gi\|13362395\|db... gi\|208820081, gi... - gi\|208820081\|ref\|ZP_03260401.1\| hypothetical protein ECH74042_A3600 [Escherichia coli O157:H7 str. E... gi\|209400144, gi... - gi\|209400144\|ref\|YP_002271399.1\| hypothetical protein ECH74115_3103 [Escherichia coli O157:H7 str. E... gi\|217317321, gi... - gi\|217329553\|ref\|ZP_03445632.1\| hypothetical protein ESCCO14588_4473 [Escherichia coli O157:H7 str. ... gi\|189376229, gi... - gi\|189376229\|gb\|EDU94645.1\| hypothetical protein ECH7EC508_0493 [Escherichia coli O157:H7 str. EC508... gi\|195937888 - gi\|195937888\|ref\|ZP_03083270.1\| hypothetical protein EscherichcoliO157_15846 [Escherichia coli O157:... gi\|208726078, gi... - gi\|208806277\|ref\|ZP_03248614.1\| hypothetical protein ECH7EC4206_A1352 [Escherichia coli O157:H7 str.... gi\|208814439, gi... - gi\|208814439\|ref\|ZP_03255768.1\| hypothetical protein ECH7EC4045_A3032 [Escherichia coli O157:H7 str.... gi\|189360997, gi... - gi\|189360997\|gb\|EDU79416.1\| hypothetical protein ECH7EC4486_5654 [Escherichia coli O157:H7 str. EC44... gi\|168775919, gi... - gi\|187768601\|gb\|EDU32445.1\| hypothetical protein ECH7EC4196_3680 [Escherichia coli O157:H7 str. EC41... gi\|188998831, gi... - gi\|188998831\|gb\|EDU67817.1\| hypothetical protein ECH7EC4076_1029 [Escherichia coli O157:H7 str. EC40... gi\|254593346, gi... - gi\|254793946\|ref\|YP_003078783.1\| hypothetical protein ECSP_2920 [Escherichia coli O157:H7 str. TW143... gi\|168789087, gi... - gi\|189371281\|gb\|EDU89697.1\| hypothetical protein ECH7EC869_2348 [Escherichia coli O157:H7 str. EC869...	187.0	[0..1]	[105..1]
gi\|227887170, gi... - gi\|227887170\|ref\|ZP_04004975.1\| yehK protein [Escherichia coli 83972], gi\|227835520\|gb\|EEJ45986.1\| y... gi\|237704576, gi... - gi\|237704576\|ref\|ZP_04535057.1\| yehK [Escherichia sp. 3_2_53FAA], gi\|226900942\|gb\|EEH87201.1\| yehK [... gi\|26248495, gi\|... - gi\|26248495\|ref\|NP_754535.1\| yehK protein [Escherichia coli CFT073], gi\|26108900\|gb\|AAN81103.1\|AE016... gi\|110343917, gi... - gi\|110642325\|ref\|YP_670055.1\| hypothetical protein ECP_2155 [Escherichia coli 536], gi\|110343917\|gb\|... gi\|91211404, gi\|... - gi\|91211404\|ref\|YP_541390.1\| hypothetical protein UTI89_C2391 [Escherichia coli UTI89], gi\|91072978\|...	111.0	[0..1]	[60..1]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVQKELVAI YDYEVPVPED PFSFRLEIHK CSELFTGSVY RLERFRLRPT FHQRDREDAD  60
   61 PLINDALIYI RDECIDERKL RGESPETVIA IFNRELQNIF NQEIE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits