YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|238913832
Organism:	Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|238913832.

Description	E-value	Query Range	Subject Range
gi\|26107210, gi\|... - gi\|26246811\|ref\|NP_752851.1\| Hypothetical protein yliH [Escherichia coli CFT073], gi\|26107210\|gb\|AAN...	209.0	[0..1]	[126..12]
gi\|187730261, gi... - gi\|187730261\|ref\|YP_001880976.1\| biofilm regulator BssR [Shigella boydii CDC 3083-94], gi\|187427253\|... gi\|188491005, gi... - gi\|188495806\|ref\|ZP_03003076.1\| biofilm regulator BssR [Escherichia coli 53638], gi\|188491005\|gb\|EDU... gi\|209911344, gi... - gi\|209918085\|ref\|YP_002292169.1\| biofilm formation regulatory protein BssR [Escherichia coli SE11], ... gi\|91209870, gi\|... - gi\|91209870\|ref\|YP_539856.1\| hypothetical protein YliH [Escherichia coli UTI89], gi\|91071444\|gb\|ABE0... gi\|157158184, gi... - gi\|157158184\|ref\|YP_001462032.1\| biofilm formation regulatory protein BssR [Escherichia coli E24377A... gi\|157160317, gi... - gi\|157160317\|ref\|YP_001457635.1\| biofilm formation regulatory protein BssR [Escherichia coli HS], gi... gi\|237707201, gi... - gi\|237707201\|ref\|ZP_04537682.1\| biofilm regulator BssR [Escherichia sp. 3_2_53FAA], gi\|226898411\|gb\|...	209.0	[0..1]	[126..12]
BSSR_ECOLI, YLIH... - (P0AAY1) Hypothetical protein yliH, Biofilm regulator bssR - Escherichia coli gi\|190905960, gi... - gi\|75238169\|ref\|ZP_00722173.1\| hypothetical protein EcolF_01003607 [Escherichia coli F11], gi\|191173... gi\|75257566, gi\|... - gi\|75257566\|ref\|ZP_00729063.1\| hypothetical protein EcolE2_01002619 [Escherichia coli E22], gi\|19306... EG13479 - repressor of biofilm formation by indole transport regulation / Repressor of biofilm formation by in... gi\|190903809, gi... - gi\|75230686\|ref\|ZP_00717157.1\| hypothetical protein EcolB7_01001146 [Escherichia coli B7A], gi\|19116... gi\|75236107, gi\|... - gi\|75236107\|ref\|ZP_00720231.1\| hypothetical protein EcolE1_01002366 [Escherichia coli E110019], gi\|1... gi\|81244694, gi\|... - gi\|82543283\|ref\|YP_407230.1\| biofilm formation regulatory protein BssR [Shigella boydii Sb227], gi\|8... gi\|75512841 - gi\|75512841\|ref\|ZP_00735333.1\| hypothetical protein Ecol5_01003036 [Escherichia coli 53638] gi\|74311380, gi\|... - gi\|74311380\|ref\|YP_309799.1\| biofilm formation regulatory protein BssR [Shigella sonnei Ss046], gi\|7... gi\|194422606, gi... - gi\|83586141\|ref\|ZP_00924778.1\| hypothetical protein Ecol1_01002667 [Escherichia coli 101-1], gi\|1944... gi\|75194989 - gi\|75194989\|ref\|ZP_00705059.1\| hypothetical protein EcolH_01000776 [Escherichia coli HS] gi\|75210568, gi\|... - gi\|75210568\|ref\|ZP_00710716.1\| hypothetical protein EcolB_01002298 [Escherichia coli B171], gi\|19442... gi\|75178369 - gi\|75178369\|ref\|ZP_00698423.1\| hypothetical protein SboyB_01001738 [Shigella boydii BS512] gi\|75189877 - gi\|75189877\|ref\|ZP_00703144.1\| hypothetical protein EcolE_01003169 [Escherichia coli E24377A] BSSR_SHIFL - Biofilm regulator BssR OS=Shigella flexneri GN=bssR PE=3 SV=1 gi\|30040563, gi\|... - gi\|30062318\|ref\|NP_836489.1\| biofilm formation regulatory protein BssR [Shigella flexneri 2a str. 24... gi\|24051046, gi\|... - gi\|24112202\|ref\|NP_706712.1\| biofilm formation regulatory protein BssR [Shigella flexneri 2a str. 30... EG13479 - repressor of biofilm formation by indole transport regulation / Repressor of biofilm formation by in... BSSR_ECO57 - Biofilm regulator BssR OS=Escherichia coli O157:H7 GN=bssR PE=3 SV=1 gi\|12513848, gi\|... - gi\|15800588\|ref\|NP_286602.1\| biofilm formation regulatory protein BssR [Escherichia coli O157:H7 EDL... gi\|218426183, gi... - gi\|218688619\|ref\|YP_002396831.1\| biofilm formation regulatory protein BssR [Escherichia coli ED1a], ... gi\|218351042, gi... - gi\|218694310\|ref\|YP_002401977.1\| biofilm formation regulatory protein BssR [Escherichia coli 55989],... gi\|218369197, gi... - gi\|218699211\|ref\|YP_002406840.1\| biofilm formation regulatory protein BssR [Escherichia coli IAI39],... gi\|218704260, gi... - gi\|218704260\|ref\|YP_002411779.1\| biofilm formation regulatory protein BssR [Escherichia coli UMN026]... gi\|195936881 - gi\|195936881\|ref\|ZP_03082263.1\| biofilm formation regulatory protein BssR [Escherichia coli O157:H7 ... gi\|208809177, gi... - gi\|208809177\|ref\|ZP_03251514.1\| biofilm regulator BssR [Escherichia coli O157:H7 str. EC4206], gi\|20... gi\|208816250, gi... - gi\|208816250\|ref\|ZP_03257429.1\| biofilm regulator BssR [Escherichia coli O157:H7 str. EC4045], gi\|20... gi\|208737741, gi... - gi\|208822256\|ref\|ZP_03262575.1\| biofilm regulator BssR [Escherichia coli O157:H7 str. EC4042], gi\|20... gi\|209159400, gi... - gi\|209398000\|ref\|YP_002269505.1\| biofilm regulator BssR [Escherichia coli O157:H7 str. EC4115], gi\|2... gi\|217325213, gi... - gi\|217325213\|ref\|ZP_03441297.1\| biofilm regulator BssR [Escherichia coli O157:H7 str. TW14588], gi\|2... gi\|218553422, gi... - gi\|218553422\|ref\|YP_002386335.1\| biofilm formation regulatory protein BssR [Escherichia coli IAI1], ... gi\|218557740, gi... - gi\|218557740\|ref\|YP_002390653.1\| biofilm formation regulatory protein BssR [Escherichia coli S88], g... gi\|115512140, gi... - gi\|117623016\|ref\|YP_851929.1\| biofilm formation regulatory protein BssR [Escherichia coli APEC O1], ... gi\|124527053, gi... - gi\|124527053\|ref\|ZP_01698890.1\| putative receptor [Escherichia coli B], gi\|124501398\|gb\|EAY48862.1\| ... gi\|15830170, gi\|... - gi\|15830170\|ref\|NP_308943.1\| biofilm formation regulatory protein BssR [Escherichia coli O157:H7 str... gi\|110641038, gi... - gi\|110641038\|ref\|YP_668768.1\| biofilm formation regulatory protein BssR [Escherichia coli 536], gi\|1... gi\|254792032, gi... - gi\|254792032\|ref\|YP_003076869.1\| putative receptor [Escherichia coli O157:H7 str. TW14359], gi\|25459... gi\|110804834, gi... - gi\|110804834\|ref\|YP_688354.1\| biofilm formation regulatory protein BssR [Shigella flexneri 5 str. 84... gi\|254160913, gi... - gi\|254160913\|ref\|YP_003044021.1\| hypothetical protein ECB_00803 [Escherichia coli B str. REL606], gi... gi\|253774162, gi... - gi\|254287727\|ref\|YP_003053475.1\| hypothetical protein ECD_00803 [Escherichia coli BL21(DE3)], gi\|253... gi\|251784354, gi... - gi\|251784354\|ref\|YP_002998658.1\| hypothetical protein B21_00820 [Escherichia coli BL21], gi\|24237662... gi\|238860449, gi... - gi\|238900095\|ref\|YP_002925891.1\| hypothetical protein BWG_0689 [Escherichia coli BW2952], gi\|2388604... gi\|89107687, gi\|... - gi\|89107687\|ref\|AP_001467.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|406... gi\|168756630, gi... - gi\|189356257\|gb\|EDU74676.1\| biofilm regulator BssR [Escherichia coli O157:H7 str. EC4401], gi\|168756... gi\|168763314, gi... - gi\|189366488\|gb\|EDU84904.1\| biofilm regulator BssR [Escherichia coli O157:H7 str. EC4501], gi\|168763... gi\|189363345, gi... - gi\|189363345\|gb\|EDU81764.1\| biofilm regulator BssR [Escherichia coli O157:H7 str. EC4486], gi\|168767... gi\|189373122, gi... - gi\|189373122\|gb\|EDU91538.1\| biofilm regulator BssR [Escherichia coli O157:H7 str. EC869], gi\|1687870... gi\|189377714, gi... - gi\|189377714\|gb\|EDU96130.1\| biofilm regulator BssR [Escherichia coli O157:H7 str. EC508], gi\|1687998... gi\|170020807, gi... - gi\|170020807\|ref\|YP_001725761.1\| biofilm formation regulatory protein BssR [Escherichia coli ATCC 87... gi\|169888330, gi... - gi\|170080495\|ref\|YP_001729815.1\| regulator of biofilm formation [Escherichia coli str. K-12 substr. ... gi\|170679707, gi... - gi\|170679707\|ref\|YP_001742943.1\| biofilm regulator BssR [Escherichia coli SMS-3-5], gi\|170517425\|gb\|... gi\|162138466 - gi\|162138466\|ref\|YP_539856.2\| biofilm formation regulatory protein BssR [Escherichia coli UTI89] gi\|168750020, gi... - gi\|188015733\|gb\|EDU53855.1\| biofilm regulator BssR [Escherichia coli O157:H7 str. EC4113], gi\|168750...	207.0	[0..1]	[126..1]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVDRLRTDL LNKLINARID LAAYLQLRKA KGYMSVSESD TLRDNFFELN RELHDHALRQ  60
   61 GLHLDQEEWN ALRRAEGALA AAAVCLMSGH HDCPTFIAVN ADKLENCLTT LTLSIQSLKA 120
  121 HSPLTQV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits