YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|255051040, gi...
Organism:	Methanocaldococcus vulcanius M7
Length:	89 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|255051040, gi....

Description	E-value	Query Range	Subject Range
gi\|89897346, gi\|... - gi\|89897346\|ref\|YP_520833.1\| hypothetical protein DSY4600 [Desulfitobacterium hafniense Y51], gi\|893...	107.0	[0..1]	[89..1]
gi\|45359005, gi\|... - gi\|45359005\|ref\|NP_988562.1\| transcription regulator ArsR [Methanococcus maripaludis S2], gi\|4504788...	105.0	[0..3]	[89..7]
gi\|72161958, gi\|... - gi\|72161958\|ref\|YP_289615.1\| ArsR family transcriptional regulator [Thermobifida fusca YX], gi\|71915...	105.0	[0..3]	[88..29]
gi\|56908284, gi\|... - gi\|56962050\|ref\|YP_173772.1\| cadmium efflux system accessory protein [Bacillus clausii KSM-K16], gi\|...	104.0	[0..2]	[85..33]
gi\|61102710 - gi\|61102710\|gb\|AAX37827.1\| pFQ25.11c [Streptomyces sp. F2]	104.0	[0..2]	[86..28]
gi\|67916590, gi\|... - gi\|67916590\|ref\|ZP_00510294.1\| regulatory protein, ArsR [Clostridium thermocellum ATCC 27405], gi\|67...	104.0	[0..2]	[84..47]
gi\|106767995, gi... - gi\|160880288\|ref\|YP_001559256.1\| ArsR family transcriptional regulator [Clostridium phytofermentans ...	103.0	[0..1]	[89..1]
gi\|17130449, gi\|... - gi\|17228598\|ref\|NP_485146.1\| transcriptional regulator [Nostoc sp. PCC 7120], gi\|17130449\|dbj\|BAB730... gi\|25300813 - pir\|\|AD1944 transcription regulator all1103 [imported] - Nostoc sp. (strain PCC 7120)	103.0	[0..2]	[86..22]
gi\|110673335, gi... - gi\|110798688\|ref\|YP_696978.1\| putative cadmium resistance transcriptional regulator CadC [Clostridiu... gi\|169347007, gi... - gi\|169347007\|ref\|ZP_02865949.1\| putative cadmium resistance transcriptional regulator CadC [Clostrid... gi\|177909258, gi... - gi\|182625570\|ref\|ZP_02953341.1\| putative cadmium resistance transcriptional regulator CadC [Clostrid... gi\|170663275, gi... - gi\|170663275\|gb\|EDT15958.1\| putative cadmium resistance transcriptional regulator CadC [Clostridium ... gi\|170711589, gi... - gi\|170711589\|gb\|EDT23771.1\| putative cadmium resistance transcriptional regulator CadC [Clostridium ... gi\|170715260, gi... - gi\|170715260\|gb\|EDT27442.1\| putative cadmium resistance transcriptional regulator CadC [Clostridium ... gi\|18145969, gi\|... - gi\|18311286\|ref\|NP_563220.1\| transcriptional regulator [Clostridium perfringens str. 13], gi\|1814596... gi\|182381216, gi... - gi\|182381216\|gb\|EDT78695.1\| putative cadmium resistance transcriptional regulator CadC [Clostridium ...	103.0	[0..2]	[82..30]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKYEKAAEI FKAFGDPTRL MILKLLAENG SMCVCKIIDE LKKPQPTISH HLNILKKAGI  60
   61 VKARKEGTWN FYYIVDDRVK EIIKLVDEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.522879
Match:	1u2wA
Description:	Crystal Structure of the Staphylococcus aureus pI258 CadC
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits