YRC Public Data Repository - Protein Structure Prediction

Protein:	CYSH_ECOBW
Organism:	Escherichia coli BW2952
Length:	244 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYSH_ECOBW.

Description	E-value	Query Range	Subject Range
gi\|37199900, gi\|... - gi\|37681149\|ref\|NP_935758.1\| phosphoadenosine phosphosulfate reductase [Vibrio vulnificus YJ016], gi...	235.0	[0..2]	[243..28]
gi\|77976021 - gi\|77976021\|ref\|ZP_00831554.1\| COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS...	234.0	[0..1]	[244..1]
CYSH_SALCH - Phosphoadenosine phosphosulfate reductase OS=Salmonella choleraesuis GN=cysH PE=3 SV=1 CYSH_SALCH - Phosphoadenosine phosphosulfate reductase OS=Salmonella choleraesuis (strain SC-B67) GN=cysH PE=3 SV... CYSH_SALCH - Phosphoadenosine phosphosulfate reductase OS=Salmonella choleraesuis GN=cysH PE=3 SV=1	233.0	[0..1]	[244..1]
gi\|238896235, gi... - gi\|238896235\|ref\|YP_002920971.1\| phosphoadenosine phosphosulfate reductase [Klebsiella pneumoniae NT... gi\|110180263 - gi\|110180263\|gb\|ABG54372.1\| PAPS reductase [Klebsiella pneumoniae] CYSH_KLEP7 - Phosphoadenosine phosphosulfate reductase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 70...	232.0	[0..1]	[244..1]
CYSH_VIBVU - Phosphoadenosine phosphosulfate reductase OS=Vibrio vulnificus (strain CMCP6) GN=cysH PE=3 SV=1 CYSH_VIBVU - Phosphoadenosine phosphosulfate reductase OS=Vibrio vulnificus GN=cysH PE=3 SV=1	232.0	[0..2]	[243..7]
lcl\|NC_016856.1_... - [gene=cysH] [protein=phosphoadenosine phosphosulfate reductase] [protein_id=YP_005239060.1] [locatio... CYSH_SALTY - Phosphoadenosine phosphosulfate reductase OS=Salmonella typhimurium GN=cysH PE=3 SV=3 gi\|205328716, gi... - gi\|205328716\|gb\|EDZ15480.1\| phosphoadenosine phosphosulfate reductase [Salmonella enterica subsp. en... gi\|168261920, gi... - gi\|205349197\|gb\|EDZ35828.1\| phosphoadenosine phosphosulfate reductase [Salmonella enterica subsp. en... gi\|199604862, gi... - gi\|200387764\|ref\|ZP_03214376.1\| phosphoadenosine phosphosulfate reductase [Salmonella enterica subsp... CYSH_SALTY - Phosphoadenosine phosphosulfate reductase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 70... CYSH_SALTY - Phosphoadenosine phosphosulfate reductase OS=Salmonella typhimurium GN=cysH PE=3 SV=3	232.0	[0..1]	[244..1]
CYSH_VIBF1 - Phosphoadenosine phosphosulfate reductase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=cysH PE...	231.0	[0..1]	[243..1]
CYSH_SALTI - Phosphoadenosine phosphosulfate reductase OS=Salmonella typhi GN=cysH PE=3 SV=3 gi\|16761718 - gi\|16761718\|ref\|NP_457335.1\| phosphoadenosine phosphosulfate reductase [Salmonella enterica subsp. e... CYSH_SALTI - Phosphoadenosine phosphosulfate reductase OS=Salmonella typhi GN=cysH PE=3 SV=3 gi\|29138835, gi\|... - gi\|29143202\|ref\|NP_806544.1\| phosphoadenosine phosphosulfate reductase [Salmonella enterica subsp. e... gi\|213648296 - gi\|213648296\|ref\|ZP_03378349.1\| phosphoadenosine phosphosulfate reductase [Salmonella enterica subsp... gi\|213609584 - gi\|213609584\|ref\|ZP_03369410.1\| phosphoadenosine phosphosulfate reductase [Salmonella enterica subsp... gi\|213424929 - gi\|213424929\|ref\|ZP_03357679.1\| phosphoadenosine phosphosulfate reductase [Salmonella enterica subsp... gi\|213023691 - gi\|213023691\|ref\|ZP_03338138.1\| phosphoadenosine phosphosulfate reductase [Salmonella enterica subsp...	231.0	[0..1]	[244..1]
gi\|77979615 - gi\|77979615\|ref\|ZP_00835032.1\| COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS...	231.0	[0..1]	[244..1]

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Predicted Domain #1

Region A:
Residues: [1-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLDLNALN ELPKVDRILA LAETNAELEK LDAEGRVAWA LDNLPGEYVL SSSFGIQAAV  60
   61 SLHLVNQIRP DIPVILTDTG YLFPETYRFI DELTDKLKLN LKVYRATESA AWQEARYGKL 120
  121 WEQGVEGIEK YNDINKVEPM NRALKELNAQ TWFAGLRREQ SGSRANLPVL AIQRGVFKVL 180
  181 PIIDWDNRTI YQYLQKHGLK YHPLWDEGYL SVGDTHTTRK WEPGMAEEET RFFGLKRECG 240
  241 LHEG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.522879
Match:	2o8vA
Description:	No description for 2o8vA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits