YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254714663
Organism:	Brucella ceti M644/93/1
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254714663.

Description	E-value	Query Range	Subject Range
gi\|21554119 - gi\|21554119\|gb\|AAM63199.1\| 30S ribosomal protein S16 [Arabidopsis thaliana]	145.0	[0..1]	[134..1]
gi\|109501187, gi... - ref\|XP_214132.1\| similar to mitochondrial ribosomal protein S16 [Rattus norvegicus], gi\|157817017\|re...	144.0	[0..3]	[119..17]
gi\|254689976 - gi\|254689976\|ref\|ZP_05153230.1\| 30S ribosomal protein S16 [Brucella abortus bv. 6 str. 870] gi\|254698128 - gi\|254698128\|ref\|ZP_05159956.1\| 30S ribosomal protein S16 [Brucella abortus bv. 2 str. 86/8/59] RS16_BRUA2 - 30S ribosomal protein S16 OS=Brucella abortus (strain 2308) GN=rpsP PE=3 SV=1 gi\|237816188, gi... - gi\|237816188\|ref\|ZP_04595183.1\| ribosomal protein S16 [Brucella abortus str. 2308 A], gi\|237788650\|g... RS16_BRUAB - 30S ribosomal protein S16 OS=Brucella abortus GN=rpsP PE=3 SV=1 RS16_BRUAB - 30S ribosomal protein S16 OS=Brucella abortus biovar 1 (strain 9-941) GN=rpsP PE=3 SV=1 RS16_BRUA1 - 30S ribosomal protein S16 OS=Brucella abortus (strain S19) GN=rpsP PE=3 SV=1 gi\|254731012 - gi\|254731012\|ref\|ZP_05189590.1\| 30S ribosomal protein S16 [Brucella abortus bv. 4 str. 292]	143.0	[0..1]	[108..1]
RS16_BARQU - 30S ribosomal protein S16 OS=Bartonella quintana GN=rpsP PE=3 SV=1 RS16_BARQU - 30S ribosomal protein S16 OS=Bartonella quintana (strain Toulouse) GN=rpsP PE=3 SV=1	142.0	[0..1]	[120..1]
ENSPTRT00000004940 - null MRPS16 - mitochondrial ribosomal protein S16	142.0	[0..3]	[119..17]
gi\|114631245 - gi\|114631245\|ref\|XP_508171.2\| PREDICTED: similar to CGI-132 protein [Pan troglodytes]	142.0	[0..3]	[119..137]
gi\|109089318 - gi\|109089318\|ref\|XP_001103151.1\| PREDICTED: mitochondrial ribosomal protein S16 [Macaca mulatta]	141.0	[0..3]	[119..17]
RT16_PONAB - 28S ribosomal protein S16, mitochondrial OS=Pongo abelii GN=MRPS16 PE=2 SV=1 RT16_PONPY - 28S ribosomal protein S16, mitochondrial precursor - Pongo pygmaeus (Orangutan)	141.0	[0..3]	[119..17]
RS16_BARHE - 30S ribosomal protein S16 OS=Bartonella henselae GN=rpsP PE=3 SV=1 RS16_BARHE - 30S ribosomal protein S16 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) GN=rpsP...	141.0	[0..1]	[103..1]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALKIRLARA GSKKRPYYHV VVADVRAPRD GRFIETVGSW NPVLPKDAER VKLDAERIQH  60
   61 WIAQGAQPTD RVLRFLDQAG IAKRPSRNNP TKGEPGKKAQ ERLALAKQAE EEAAAKAAEA 120
  121 AAAAAAPAEE AASE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.221849
Match:	1pnsP
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits