YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|225852852, gi...
Organism:	Brucella melitensis ATCC 23457
Length:	270 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|225852852, gi....

Description	E-value	Query Range	Subject Range
CRCB1_BRUAB - Putative fluoride ion transporter CrcB 1 OS=Brucella abortus biovar 1 (strain 9-941) GN=crcB1 PE=3 S... gi\|225617827, gi... - gi\|225627822\|ref\|ZP_03785859.1\| CrcB family protein [Brucella ceti str. Cudo], gi\|225617827\|gb\|EEH14... gi\|254694057 - gi\|254694057\|ref\|ZP_05155885.1\| camphor resistance protein CrcB [Brucella abortus bv. 3 str. Tulya] gi\|254697708 - gi\|254697708\|ref\|ZP_05159536.1\| camphor resistance protein CrcB [Brucella abortus bv. 2 str. 86/8/59... gi\|237789068, gi... - gi\|237815770\|ref\|ZP_04594767.1\| CrcB family protein [Brucella abortus str. 2308 A], gi\|237789068\|gb\|... gi\|254689568 - gi\|254689568\|ref\|ZP_05152822.1\| camphor resistance protein CrcB [Brucella abortus bv. 6 str. 870] gi\|254710418 - gi\|254710418\|ref\|ZP_05172229.1\| camphor resistance protein CrcB [Brucella pinnipedialis B2/94] gi\|254730598 - gi\|254730598\|ref\|ZP_05189176.1\| camphor resistance protein CrcB [Brucella abortus bv. 4 str. 292] gi\|254702093 - gi\|254702093\|ref\|ZP_05163921.1\| camphor resistance protein CrcB [Brucella suis bv. 5 str. 513] gi\|254708048 - gi\|254708048\|ref\|ZP_05169876.1\| camphor resistance protein CrcB [Brucella pinnipedialis M163/99/10] gi\|148370962, gi... - gi\|148559705\|ref\|YP_001259265.1\| camphor resistance protein CrcB [Brucella ovis ATCC 25840], gi\|1483... CRCB1_BRUAB - Protein crcB homolog 1 OS=Brucella abortus GN=crcB1 PE=3 SV=1 gi\|189024498, gi... - gi\|189024498\|ref\|YP_001935266.1\| CrcB family protein [Brucella abortus S19], gi\|189020070\|gb\|ACD7279...	270.0	[0..1]	[270..1]
gi\|82700187 - gi\|82700187\|ref\|YP_414761.1\| camphor resistance protein CrcB [Brucella melitensis biovar Abortus 230... gi\|82616288 - gi\|82616288\|emb\|CAJ11345.1\| Camphor resistance CrcB protein:Domain of unknown function DUF302 [Bruce...	251.0	[0..17]	[270..1]
CRCB1_BRUSU - Putative fluoride ion transporter CrcB 1 OS=Brucella suis biovar 1 (strain 1330) GN=crcB1 PE=3 SV=1 CRCB1_BRUSU, CRB... - Protein crcB homolog 1 OS=Brucella suis GN=crcB1 PE=3 SV=1, (Q8FZV1) Protein crcB homolog 3	248.0	[0..17]	[270..1]
gi\|33575814, gi\|... - gi\|33601378\|ref\|NP_888938.1\| hypothetical protein BB2398 [Bordetella bronchiseptica RB50], gi\|335758...	144.0	[0..115]	[270..5]
gi\|33572995 - gi\|33572995\|emb\|CAE36634.1\| putative exported protein [Bordetella parapertussis] gi\|33595992 - gi\|33595992\|ref\|NP_883635.1\| hypothetical protein BPP1332 [Bordetella parapertussis 12822]	139.0	[0..115]	[270..5]
gi\|54298310, gi\|... - gi\|54298310\|ref\|YP_124679.1\| hypothetical protein lpp2368 [Legionella pneumophila str. Paris], gi\|53...	136.0	[0..150]	[258..14]
gi\|52628356, gi\|... - gi\|52841245\|ref\|YP_095044.1\| hypothetical protein lpg1011 [Legionella pneumophila subsp. pneumophila... gi\|19881007 - gi\|19881007\|gb\|AAM00634.1\| unknown [Legionella pneumophila]	135.0	[0..150]	[255..14]
gi\|113461801, gi... - gi\|113461801\|ref\|YP_719870.1\| hypothetical protein HS_1665 [Haemophilus somnus 129PT], gi\|112823844\|...	134.0	[0..122]	[260..1]
gi\|170718113, gi... - gi\|53728690\|ref\|ZP_00131767.2\| COG3439: Uncharacterized conserved protein [Haemophilus somnus 2336],...	132.0	[0..122]	[260..1]
gi\|33593157, gi\|... - gi\|33593157\|ref\|NP_880801.1\| hypothetical protein BP2147 [Bordetella pertussis Tohama I], gi\|3356353...	132.0	[0..133]	[270..22]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDIIILVVI GGAFGAMTRE FIMLMVPPLT DGFPLDILVA NVVACFLLGT VTALYARKIH  60
   61 SRDVHTIIGT GMMGGVSTFS SFAYGSVVLA SASVSAFLIA AAYVTVSVVA GYVAVLAGMK 120
  121 FGEKSADILH R

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	18.251812
Match:	PF02537.6
Description:	No description for PF02537.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [132-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPPMASIIDS GLVTVESRHS VAETIERVAA KAKSMGMNVF TRVDHGAGAK EAGLGLPPTE  60
   61 LIIFGNPQNG TVLMQDKRTI GLDLPIRALA WEDGSGKVWL TVNDPAWLAQ RHSLGLSSDV 120
  121 AIKAMVTGTG TVTKYAAGD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.30103
Match:	1q9uA
Description:	Crystal structure of hypothetical protein APC35924 from Bacillus stearothermophilus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits