YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229369814, gi...
Organism:	Vibrio cholerae MJ-1236
Length:	156 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229369814, gi....

Description	E-value	Query Range	Subject Range
gi\|37197786, gi\|... - gi\|37679044\|ref\|NP_933653.1\| hypothetical protein VV0860 [Vibrio vulnificus YJ016], gi\|37197786\|dbj\|...	219.0	[0..5]	[156..10]
gi\|78362274, gi\|... - gi\|78365738\|ref\|ZP_00836023.1\| Protein of unknown function DUF193 [Shewanella sp. PV-4], gi\|78362274...	217.0	[0..5]	[156..30]
gi\|82736923, gi\|... - gi\|82736923\|ref\|ZP_00899777.1\| Protein of unknown function DUF193 [Pseudomonas putida F1], gi\|827159...	214.0	[0..7]	[154..36]
gi\|70732824, gi\|... - gi\|70732824\|ref\|YP_262591.1\| hypothetical protein PFL_5523 [Pseudomonas fluorescens Pf-5], gi\|683471...	214.0	[0..7]	[154..19]
gi\|153803001, gi... - gi\|153803001\|ref\|ZP_01957587.1\| transcriptional regulator, NrdR family [Vibrio cholerae MZO-3], gi\|1... gi\|126519215, gi... - gi\|153823254\|ref\|ZP_01975921.1\| transcriptional regulator, NrdR family [Vibrio cholerae B33], gi\|126... gi\|254286057, gi... - gi\|254286057\|ref\|ZP_04961018.1\| transcriptional regulator, NrdR family [Vibrio cholerae AM-19226], g... gi\|153828179, gi... - gi\|153828179\|ref\|ZP_01980846.1\| transcriptional regulator, NrdR family [Vibrio cholerae 623-39], gi\|... gi\|75822461, gi\|... - gi\|75822461\|ref\|ZP_00752082.1\| COG1327: Predicted transcriptional regulator, consists of a Zn-ribbon... gi\|116219414, gi... - gi\|75818770\|ref\|ZP_00748895.1\| COG1327: Predicted transcriptional regulator, consists of a Zn-ribbon... gi\|75814848, gi\|... - gi\|75814848\|ref\|ZP_00745393.1\| COG1327: Predicted transcriptional regulator, consists of a Zn-ribbon... NRDR_VIBCH, Y227... - (Q9KPU0) Hypothetical UPF0168 protein VC2272, (Q9KPU0) UPF0168 protein VC2272, Transcriptional repre... gi\|75828873, gi\|... - gi\|75828873\|ref\|ZP_00758205.1\| COG1327: Predicted transcriptional regulator, consists of a Zn-ribbon... NRDR_VIBC3 - Transcriptional repressor NrdR OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 3... NRDR_VIBCH - Transcriptional repressor NrdR OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N169... gi\|121549633, gi... - gi\|121586221\|ref\|ZP_01676012.1\| transcriptional regulator, NrdR family [Vibrio cholerae 2740-80], gi... gi\|153216175, gi... - gi\|153216175\|ref\|ZP_01950314.1\| transcriptional regulator, NrdR family [Vibrio cholerae 1587], gi\|12... gi\|124119717, gi... - gi\|153221370\|ref\|ZP_01952348.1\| transcriptional regulator, NrdR family [Vibrio cholerae MAK 757], gi...	212.0	[0..8]	[156..1]
gi\|90023099, gi\|... - gi\|90023099\|ref\|YP_528926.1\| protein of unknown function DUF193 [Saccharophagus degradans 2-40], gi\|...	212.0	[0..8]	[155..29]
gi\|26522769 - gi\|26522769\|dbj\|BAC44856.1\| RibX [Vibrio fischeri] NRDR_VIBFM - Transcriptional repressor NrdR OS=Vibrio fischeri (strain MJ11) GN=nrdR PE=3 SV=1 NRDR_VIBF1 - Transcriptional repressor NrdR OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=nrdR PE=3 SV=1	212.0	[0..8]	[154..1]
NRDR_VIBTL - Transcriptional repressor NrdR OS=Vibrio tasmaniensis (strain LGP32) GN=nrdR PE=3 SV=1 gi\|84375023, gi\|... - gi\|84394364\|ref\|ZP_00993085.1\| hypothetical protein V12B01_22231 [Vibrio splendidus 12B01], gi\|84375... gi\|86147438, gi\|... - gi\|86147438\|ref\|ZP_01065750.1\| hypothetical protein MED222_21329 [Vibrio sp. MED222], gi\|85834731\|gb...	211.0	[0..8]	[156..1]
Y678_VIBPA, NRDR... - (Q87RU8) UPF0168 protein VP0678, Transcriptional repressor NrdR OS=Vibrio parahaemolyticus GN=nrdR P... NRDR_VIBPA - Transcriptional repressor NrdR OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=nr...	211.0	[0..8]	[156..1]
NRDR_VIBVU - Transcriptional repressor NrdR OS=Vibrio vulnificus (strain CMCP6) GN=nrdR PE=3 SV=1 NRDR_VIBVU, Y324... - (Q8DF95) UPF0168 protein VV10324, Transcriptional repressor NrdR OS=Vibrio vulnificus GN=nrdR PE=3 S...	211.0	[0..8]	[156..1]

Back

Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPCYGGNMHC PFCSENDTKV IDSRLVADGH QVRRRRQCLA CNERFTTFET AELVMPRVIK  60
   61 SNGNREPFDE EKMIGGLQRA LEKRPVSADA IELAISTIKS KLRATGEREV PSKLIGNLVM 120
  121 EQLKVLDKVA YIRFASVYRS FEDVREFGEE IAKLQD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.522879
Match:	1zyzA
Description:	Structures of Yeast Ribonucloetide Reductase I
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits