YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|227177082, gi...
Organism:	Enterococcus faecalis HH22
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|227177082, gi....

Description	E-value	Query Range	Subject Range
SODM_GEOSE - Superoxide dismutase [Mn] OS=Geobacillus stearothermophilus GN=sodA PE=1 SV=2	325.0	[0..1]	[202..1]
gi\|229330794, gi... - gi\|229498423\|ref\|ZP_04392119.1\| Superoxide dismutase [Geobacillus sp. Y412MC52], gi\|229330794\|gb\|EEN... gi\|220706675, gi... - gi\|221089386\|ref\|ZP_03558905.1\| Superoxide dismutase [Geobacillus sp. Y412MC61], gi\|220706675\|gb\|EED... gi\|56420992, gi\|... - gi\|56420992\|ref\|YP_148310.1\| manganese superoxide dismutase [Geobacillus kaustophilus HTA426], gi\|56... gi\|7578509 - gi\|7578509\|gb\|AAF64074.1\|AF147780_1 superoxide dismutase [Geobacillus thermoleovorans] SODM_BACCA - Superoxide dismutase [Mn] OS=Bacillus caldotenax GN=sodA PE=3 SV=2	323.0	[0..1]	[202..1]
gi\|3320377 - gi\|3320377\|gb\|AAC26483.1\| manganese superoxide dismutase [Vibrio alginolyticus]	321.0	[0..1]	[201..1]
SODM_BACHD - Superoxide dismutase [Mn] OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM ... SODM_BACHD - Superoxide dismutase [Mn] OS=Bacillus halodurans GN=sodA PE=3 SV=1	319.0	[0..1]	[202..1]
gi\|7798571 - gi\|7798571\|dbj\|BAA95631.1\| superoxide dismutase [Geobacillus thermoleovorans]	319.0	[0..1]	[202..1]
gi\|221323949 - gi\|221323949\|ref\|ZP_03605243.1\| superoxide dismutase [Bacillus subtilis subsp. subtilis str. SMY] gi\|221319672 - gi\|221319672\|ref\|ZP_03600966.1\| superoxide dismutase [Bacillus subtilis subsp. subtilis str. JH642] gi\|221314749 - gi\|221314749\|ref\|ZP_03596554.1\| superoxide dismutase [Bacillus subtilis subsp. subtilis str. NCIB 36... SODM_BACSU - Superoxide dismutase [Mn] OS=Bacillus subtilis (strain 168) GN=sodA PE=1 SV=5 SODM_BACSU - Superoxide dismutase [Mn] OS=Bacillus subtilis GN=sodA PE=1 SV=5	314.0	[0..1]	[202..1]
gi\|254993243 - gi\|254993243\|ref\|ZP_05275433.1\| superoxide dismutase [Listeria monocytogenes FSL J2-064] gi\|254879748 - gi\|254879748\|ref\|ZP_05252458.1\| superoxide dismutase [Listeria monocytogenes FSL J2-071] gi\|255522265 - gi\|255522265\|ref\|ZP_05389502.1\| superoxide dismutase [Listeria monocytogenes FSL J1-175] gi\|133727348, gi... - gi\|153166829\|ref\|ZP_01927318.1\| superoxide dismutase, Mn [Listeria monocytogenes FSL N1-017], gi\|133... gi\|254932624, gi... - gi\|254932624\|ref\|ZP_05265983.1\| superoxide dismutase [Listeria monocytogenes HPB2262], gi\|153202275\|... gi\|225876502, gi... - gi\|226224040\|ref\|YP_002758147.1\| superoxide dismutase [Listeria monocytogenes Clip81459], gi\|2258765... gi\|46880935, gi\|... - gi\|46907667\|ref\|YP_014056.1\| superoxide dismutase, Mn [Listeria monocytogenes str. 4b F2365], gi\|468... gi\|47092729, gi\|... - gi\|47092729\|ref\|ZP_00230515.1\| superoxide dismutase, Mn [Listeria monocytogenes str. 4b H7858], gi\|4... gi\|254852065 - gi\|254852065\|ref\|ZP_05241413.1\| superoxide dismutase [Listeria monocytogenes FSL R2-503] gi\|254824502 - gi\|254824502\|ref\|ZP_05229503.1\| superoxide dismutase [Listeria monocytogenes FSL J1-194]	313.0	[0..1]	[202..1]
SODM_LISIN - Superoxide dismutase [Mn] OS=Listeria innocua GN=sodA PE=3 SV=1 SODM_LISIN - Superoxide dismutase [Mn] OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=sodA PE=3 SV=1	313.0	[0..1]	[202..1]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYTLPELPY AYDALEPYID VETMHLHHDK HHNTYVTNLN AAIEKHPELG EKSVENLISD  60
   61 MNAIPEDIRT AVRNNGGGHA NHTFFWEIMA PNAGGQPTGA IKEAIDETFG SFDEMKAAFK 120
  121 TAATGRFGSG WAWLVVNNGK LEITSTPNQD SPLMDGQTPV LGLDVWEHAY YLKYKNVRPD 180
  181 YIEAFWNVVN WDKVNELFAA AK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	84.221849
Match:	1xuqA
Description:	Crystal Structure of SodA-1 (BA4499) from Bacillus anthracis at 1.8A Resolution.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits