YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|253972302, gi...
Organism:	Escherichia coli B str. REL606
Length:	81 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|253972302, gi....

Description	E-value	Query Range	Subject Range
gi\|7467020 - gi\|7467020\|pir\|\|G64759 yahM protein - Escherichia coli (strain K-12) gi\|16128312, gi\|... - gb\|AAC73430.1\| orf, hypothetical protein; unknown CDS [Escherichia coli K12], gi\|16128312\|ref\|NP_41...	147.0	[0..1]	[81..11]
gi\|74310898, gi\|... - gi\|74310898\|ref\|YP_309317.1\| hypothetical protein SSON_0303 [Shigella sonnei Ss046], gi\|73854375\|gb\|...	146.0	[0..1]	[81..11]
gi\|91070980, gi\|... - gi\|91209406\|ref\|YP_539392.1\| hypothetical protein UTI89_C0360 [Escherichia coli UTI89], gi\|91070980\|...	143.0	[0..1]	[81..11]
gi\|15800056, gi\|... - gi\|15800056\|ref\|NP_286068.1\| hypothetical protein Z0423 [Escherichia coli O157:H7 EDL933], gi\|125131... gi\|13359838 - gi\|13359838\|dbj\|BAB33804.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi\|13359838 - gi\|13359838\|dbj\|BAB33804.1\| hypothetical protein [Escherichia coli O157:H7] gi\|209744822, gi... - pir\|\|H85526 hypothetical protein Z0423 [imported] - Escherichia coli (strain O157:H7, substrain EDL...	86.0	[0..36]	[81..1]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVQLFKTLL NQIPLLSSLQ SGTLPLFGYS GWGRPMKKAH TGESGLKWEA KDSSKLIGNK  60
   61 DHALRGLSSP MAVIRQIRLI T

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits