YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254710281
Organism:	Brucella pinnipedialis B2/94
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254710281.

Description	E-value	Query Range	Subject Range
RS11_MARMM - 30S ribosomal protein S11 OS=Maricaulis maris (strain MCS10) GN=rpsK PE=3 SV=1	190.0	[0..1]	[129..1]
RS11_BARQU - 30S ribosomal protein S11 OS=Bartonella quintana (strain Toulouse) GN=rpsK PE=3 SV=1 RS11_BARQU - 30S ribosomal protein S11 OS=Bartonella quintana GN=rpsK PE=3 SV=1	189.0	[0..1]	[129..1]
RS11_BARHE - 30S ribosomal protein S11 OS=Bartonella henselae GN=rpsK PE=3 SV=1 RS11_BARHE - 30S ribosomal protein S11 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) GN=rpsK...	188.0	[0..1]	[129..1]
RS11_CAUCR - 30S ribosomal protein S11 OS=Caulobacter crescentus GN=rpsK PE=3 SV=1 RS11_CAUCN - 30S ribosomal protein S11 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rpsK PE=3 SV=1 RS11_CAUCR - 30S ribosomal protein S11 OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=rpsK PE=3 SV=1	187.0	[0..1]	[129..1]
RS11_CAUSK - 30S ribosomal protein S11 OS=Caulobacter sp. (strain K31) GN=rpsK PE=3 SV=1	187.0	[0..1]	[129..1]
gi\|23012205 - gi\|23012205\|ref\|ZP_00052349.1\| COG0100: Ribosomal protein S11 [Magnetospirillum magnetotacticum MS-1... RS11_METPB - 30S ribosomal protein S11 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=...	186.0	[0..1]	[129..1]
gi\|83858543, gi\|... - gi\|83858543\|ref\|ZP_00952065.1\| 30S ribosomal protein S11 [Oceanicaulis alexandrii HTCC2633], gi\|8385...	186.0	[0..1]	[129..1]
RS11_SINMW - 30S ribosomal protein S11 OS=Sinorhizobium medicae (strain WSM419) GN=rpsK PE=3 SV=1 RS11_RHISN - 30S ribosomal protein S11 OS=Rhizobium sp. (strain NGR234) GN=rpsK PE=3 SV=1 RS11_RHIME - 30S ribosomal protein S11 OS=Rhizobium meliloti GN=rpsK PE=3 SV=1 RS11_RHIME - 30S ribosomal protein S11 OS=Rhizobium meliloti (strain 1021) GN=rpsK PE=3 SV=1	186.0	[0..1]	[129..1]
gi\|88915995, gi\|... - gi\|88937250\|ref\|ZP_01142827.1\| ribosomal protein S11 [Geobacter uraniumreducens Rf4], gi\|88915995\|gb...	186.0	[0..15]	[129..17]
RS11_GEOMG - 30S ribosomal protein S11 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rps...	186.0	[0..15]	[129..17]

Back

Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKEATRVRR RERKNISSGV AHVNSTFNNT MITITDAQGN AIAWSSAGAQ GFKGSRKSTP  60
   61 FAAQIAAEDC AKKAQEHGMR SLEVEVCGPG SGRESALRAL QAAGFVITSI RDVTPIPHNG 120
  121 CRPRKKRRV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.39794
Match:	1vs5K
Description:	No description for 1vs5K was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.83351366956976	bayes_pls_golite062009
structural molecule activity	9.25292687983044	bayes_pls_golite062009
RNA binding	1.52264031918826	bayes_pls_golite062009
nucleic acid binding	0.983215686081669	bayes_pls_golite062009
binding	0.558121720172199	bayes_pls_golite062009
rRNA binding	0.357032493028	bayes_pls_golite062009
catalytic activity	0.249767694451989	bayes_pls_golite062009
translation regulator activity	0.17520676474539	bayes_pls_golite062009
protein binding	0.013467373576568	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: