YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254039018, gi...
Organism:	Escherichia sp. 1_1_43
Length:	848 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254039018, gi....

Description	E-value	Query Range	Subject Range
gi\|170022171, gi... - gi\|170022171\|ref\|YP_001727125.1\| adenylate cyclase [Escherichia coli ATCC 8739], gi\|169757099\|gb\|ACA... gi\|187731691, gi... - gi\|187731691\|ref\|YP_001882499.1\| adenylate cyclase, class I [Shigella boydii CDC 3083-94], gi\|187428... gi\|192926660, gi... - gi\|193065693\|ref\|ZP_03046758.1\| adenylate cyclase, class I [Escherichia coli E22], gi\|192926660\|gb\|E... gi\|192958671, gi... - gi\|193068051\|ref\|ZP_03049016.1\| adenylate cyclase, class I [Escherichia coli E110019], gi\|192958671\|... gi\|168775644, gi... - gi\|187768909\|gb\|EDU32753.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4196], gi\|16... gi\|168780704, gi... - gi\|189001401\|gb\|EDU70387.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4076], gi\|16... gi\|168786643, gi... - gi\|189373311\|gb\|EDU91727.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC869], gi\|168... gi\|189376665, gi... - gi\|189376665\|gb\|EDU95081.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC508], gi\|168... gi\|188015428, gi... - gi\|188015428\|gb\|EDU53550.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4113], gi\|16... gi\|168753702, gi... - gi\|189359031\|gb\|EDU77450.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4401], gi\|16... gi\|168763930, gi... - gi\|189365987\|gb\|EDU84403.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4501], gi\|16... gi\|189362577, gi... - gi\|189362577\|gb\|EDU80996.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4486], gi\|16... gi\|15833990, gi\|... - gi\|15833990\|ref\|NP_312763.1\| adenylate cyclase [Escherichia coli O157:H7 str. Sakai], gi\|13364212\|db... gi\|209396473, gi... - gi\|209396473\|ref\|YP_002273322.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4115], ... gi\|209921278, gi... - gi\|209921278\|ref\|YP_002295362.1\| adenylate cyclase [Escherichia coli SE11], gi\|209914537\|dbj\|BAG7961... gi\|74314317, gi\|... - gi\|74314317\|ref\|YP_312736.1\| adenylate cyclase [Shigella sonnei Ss046], gi\|73857794\|gb\|AAZ90501.1\| a... gi\|217324973, gi... - gi\|217324973\|ref\|ZP_03441057.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. TW14588], ... gi\|124530456, gi... - gi\|124530456\|ref\|ZP_01701114.1\| putative adenylate cyclase [Escherichia coli B], gi\|124499222\|gb\|EAY... gi\|81247568, gi\|... - gi\|82546157\|ref\|YP_410104.1\| adenylate cyclase [Shigella boydii Sb227], gi\|81247568\|gb\|ABB68276.1\| a... gi\|218354252, gi... - gi\|218697520\|ref\|YP_002405187.1\| adenylate cyclase [Escherichia coli 55989], gi\|218354252\|emb\|CAV009... gi\|195938094 - gi\|195938094\|ref\|ZP_03083476.1\| adenylate cyclase [Escherichia coli O157:H7 str. EC4024] gi\|208728386, gi... - gi\|208808585\|ref\|ZP_03250922.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4206], g... gi\|208812263, gi... - gi\|208812263\|ref\|ZP_03253592.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4045], g... gi\|208740087, gi... - gi\|208819964\|ref\|ZP_03260284.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4042], g... gi\|209753302, gi... - pir\|\|H91220 adenylate cyclase [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952)... gi\|157068959, gi... - gi\|157163279\|ref\|YP_001460597.1\| adenylate cyclase [Escherichia coli HS], gi\|157068959\|gb\|ABV08214.1... gi\|254595202, gi... - gi\|254795802\|ref\|YP_003080639.1\| adenylate cyclase [Escherichia coli O157:H7 str. TW14359], gi\|25459... CYAA_ECO57 - Adenylate cyclase OS=Escherichia coli O157:H7 GN=cyaA PE=3 SV=1	1575.0	[0..1]	[848..1]
gi\|581058, gi\|581057 - gi\|581058\|emb\|CAA47280.1\| adenylate cyclase [Escherichia coli], gi\|581057\|emb\|CAA25817.1\| adenylate ...	1575.0	[0..1]	[848..1]
gi\|110617054, gi... - gi\|110807506\|ref\|YP_691026.1\| adenylate cyclase [Shigella flexneri 5 str. 8401], gi\|110617054\|gb\|ABF...	1574.0	[0..1]	[848..1]
gi\|24054366, gi\|... - gi\|24115098\|ref\|NP_709608.1\| adenylate cyclase [Shigella flexneri 2a str. 301], gi\|24054366\|gb\|AAN45... CYAA_SHIFL - Adenylate cyclase OS=Shigella flexneri GN=cyaA PE=3 SV=1 gi\|30064901, gi\|... - gi\|30064901\|ref\|NP_839072.1\| adenylate cyclase [Shigella flexneri 2a str. 2457T], gi\|30043161\|gb\|AAP...	1572.0	[0..1]	[848..1]
gi\|218367638, gi... - gi\|218560869\|ref\|YP_002393782.1\| adenylate cyclase [Escherichia coli S88], gi\|218367638\|emb\|CAR05421... gi\|91074901, gi\|... - gi\|91213327\|ref\|YP_543313.1\| adenylate cyclase [Escherichia coli UTI89], gi\|91074901\|gb\|ABE09782.1\| ... gi\|229775950 - gi\|229775950\|ref\|YP_859386.2\| adenylate cyclase [Escherichia coli APEC O1] gi\|226902984, gi... - gi\|237702813\|ref\|ZP_04533294.1\| adenylate cyclase [Escherichia sp. 3_2_53FAA], gi\|226902984\|gb\|EEH89...	1571.0	[0..1]	[848..1]
gi\|12518673, gi\|... - gi\|15804394\|ref\|NP_290434.1\| adenylate cyclase [Escherichia coli O157:H7 EDL933], gi\|12518673\|gb\|AAG... gi\|25292228 - gi\|25292228\|pir\|\|B86067 adenylate cyclase [imported] - Escherichia coli (strain O157:H7, substrain E...	1571.0	[0..1]	[848..1]
gi\|191174263, gi... - gi\|191174263\|ref\|ZP_03035772.1\| adenylate cyclase, class I [Escherichia coli F11], gi\|190905446\|gb\|E... gi\|227888611, gi... - gi\|227888611\|ref\|ZP_04006416.1\| adenylate cyclase [Escherichia coli 83972], gi\|227834450\|gb\|EEJ44916... CYAA_ECOL6 - Adenylate cyclase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=cyaA PE=3 SV=1 gi\|229560205 - gi\|229560205\|ref\|YP_671860.2\| adenylate cyclase [Escherichia coli 536] CYAA_ECOL6 - Adenylate cyclase OS=Escherichia coli O6 GN=cyaA PE=3 SV=1	1570.0	[0..1]	[848..1]
gi\|81243164, gi\|... - gi\|82779016\|ref\|YP_405365.1\| adenylate cyclase [Shigella dysenteriae Sd197], gi\|81243164\|gb\|ABB63874...	1566.0	[0..1]	[848..1]
gi\|78214648, gi\|... - gi\|78214648\|gb\|ABB36514.1\| adenylate cyclase [Salmonella enterica subsp. enterica serovar Derby], gi... CYAA_SALTY - Adenylate cyclase OS=Salmonella typhimurium GN=cyaA PE=3 SV=1 gi\|238912945 - gi\|238912945\|ref\|ZP_04656782.1\| adenylate cyclase [Salmonella enterica subsp. enterica serovar Tenne... gi\|168244628, gi... - gi\|205336515\|gb\|EDZ23279.1\| adenylate cyclase, class I [Salmonella enterica subsp. enterica serovar ... gi\|205348157, gi... - gi\|205348157\|gb\|EDZ34788.1\| adenylate cyclase, class I [Salmonella enterica subsp. enterica serovar ... gi\|168467646, gi... - gi\|195629941\|gb\|EDX48601.1\| adenylate cyclase, class I [Salmonella enterica subsp. enterica serovar ... gi\|194401239, gi... - gi\|194442576\|ref\|YP_002043173.1\| adenylate cyclase, class I [Salmonella enterica subsp. enterica ser... gi\|161617055, gi... - gi\|161617055\|ref\|YP_001591020.1\| adenylate cyclase [Salmonella enterica subsp. enterica serovar Para... gi\|167993873, gi... - gi\|205328123\|gb\|EDZ14887.1\| adenylate cyclase, class I [Salmonella enterica subsp. enterica serovar ... gi\|168233868, gi... - gi\|205332096\|gb\|EDZ18860.1\| adenylate cyclase, class I [Salmonella enterica subsp. enterica serovar ... CYAA_SALTY - Adenylate cyclase OS=Salmonella typhimurium GN=cyaA PE=3 SV=1 gi\|78214730, gi\|... - gi\|78214734\|gb\|ABB36557.1\| adenylate cyclase [Salmonella enterica subsp. enterica], gi\|78214732\|gb\|A... gi\|78214728, gi\|... - gi\|78214728\|gb\|ABB36554.1\| adenylate cyclase [Salmonella enterica subsp. enterica serovar 4,12;I,-],... gi\|78214706, gi\|... - gi\|78214724\|gb\|ABB36552.1\| adenylate cyclase [Salmonella enterica subsp. enterica serovar Heidelberg... gi\|213425402 - gi\|213425402\|ref\|ZP_03358152.1\| adenylate cyclase [Salmonella enterica subsp. enterica serovar Typhi... gi\|78214698, gi\|... - gi\|78214700\|gb\|ABB36540.1\| adenylate cyclase [Salmonella enterica subsp. enterica serovar Newport], ... gi\|213865140 - gi\|213865140\|ref\|ZP_03387259.1\| adenylate cyclase [Salmonella enterica subsp. enterica serovar Typhi... lcl\|NC_016856.1_... - [gene=cyaA] [protein=adenylate cyclase] [protein_id=YP_005240199.1] [location=4160058..4162604] gi\|78214672, gi\|... - gi\|78214674\|gb\|ABB36527.1\| adenylate cyclase [Salmonella enterica subsp. enterica serovar Dublin], g... gi\|214000758 - gi\|214000758\|ref\|ZP_03411493.1\| adenylate cyclase [Salmonella enterica subsp. enterica serovar Typhi... gi\|119351625, gi... - gi\|78214668\|gb\|ABB36524.1\| adenylate cyclase [Salmonella enterica subsp. enterica serovar Enteritidi... gi\|224470286, gi... - gi\|224585758\|ref\|YP_002639557.1\| adenylate cyclase [Salmonella enterica subsp. enterica serovar Para... CYAA_SALTI - Adenylate cyclase OS=Salmonella typhi GN=cyaA PE=3 SV=1 gi\|204320646, gi... - gi\|204930242\|ref\|ZP_03221219.1\| adenylate cyclase, class I [Salmonella enterica subsp. enterica sero... CYAA_SALTY - Adenylate cyclase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=cyaA PE=3 SV=1 gi\|206710948, gi... - gi\|207859145\|ref\|YP_002245796.1\| adenylate cyclase [Salmonella enterica subsp. enterica serovar Ente... gi\|213029665 - gi\|213029665\|ref\|ZP_03344112.1\| adenylate cyclase [Salmonella enterica subsp. enterica serovar Typhi... CYAA_SALTI - Adenylate cyclase OS=Salmonella typhi GN=cyaA PE=3 SV=1 gi\|213052022 - gi\|213052022\|ref\|ZP_03344900.1\| adenylate cyclase [Salmonella enterica subsp. enterica serovar Typhi... gi\|194405912, gi... - gi\|194447608\|ref\|YP_002047955.1\| adenylate cyclase [Salmonella enterica subsp. enterica serovar Heid... gi\|194471871, gi... - gi\|194471871\|ref\|ZP_03077855.1\| adenylate cyclase, class I [Salmonella enterica subsp. enterica sero... gi\|29139319, gi\|... - gi\|29143684\|ref\|NP_807026.1\| adenylate cyclase [Salmonella enterica subsp. enterica serovar Typhi st... gi\|198246090, gi... - gi\|198246090\|ref\|YP_002217872.1\| adenylate cyclase, class I [Salmonella enterica subsp. enterica ser... gi\|16762195 - gi\|16762195\|ref\|NP_457812.1\| adenylate cyclase [Salmonella enterica subsp. enterica serovar Typhi st... gi\|200388716, gi... - gi\|200388716\|ref\|ZP_03215328.1\| adenylate cyclase, class I [Salmonella enterica subsp. enterica sero...	1555.0	[0..1]	[848..1]
gi\|78214680, gi\|... - gi\|78214680\|gb\|ABB36530.1\| adenylate cyclase [Salmonella enterica subsp. enterica serovar Pullorum],...	1554.0	[0..1]	[848..1]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLYIETLKQ RLDAINQLRV DRALAAMGPA FQQVYSLLPT LLHYHHPLMP GYLDGNVPKG  60
   61 ICLYTPDETQ RHYLNELELY RGMSVQDPPK GELPITGVYT MGST

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [105-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSVGQSCSSD LDIWVCHQSW LDSEERQLLQ RKCSLLENWA ASLGVEVSFF LIDENRFRHN  60
   61 ESGSLGGEDC GSTQHILLLD EFYRTAVRLA GKRILWNMVP CDEEEHYDDY VMTLYAQGVL 120
  121 TPNEWLDLGG LSSLSAEEYF GASLWQLYKS IDSPYKAVLK TLLLEAYSWE YPNPRLLAKD 180
  181 IKQRLHDGEI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [295-455]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSFGLDPYCM MLERVTEYLT AIEDFTRLDL VRRCFYLKVC EKLSRERACV GWRRAVLSQL  60
   61 VSEWGWDEAR LAMLDNRANW KIDQVREAHN ELLDAMMQSY RNLIRFARRN NLSVSASPQD 120
  121 IGVLTRKLYA AFEALPGKVT LVNPQISPDL SEPNLTFIYV P

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [456-666]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGRANRSGWY LYNRAPNIES IISHQPLEYN RYLNKLVAWA WFNGLLTSRT RLYIKGNGIV  60
   61 DLPKLQEMVA DVSHHFPLRL PAPTPKALYS PCEIRHLAII VNLEYDPTAA FRNQVVHFDF 120
  121 RKLDVFSFGE NQNCLVGSVD LLYRNSWNEV RTLHFNGEQS MIEALKTILG KMHQDAAPPD 180
  181 SVEVFCYSQH LRGLIRTRVQ QLVSECIELR L

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [667-848]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSTRQETGRF KALRVSGQTW GLFFERLNVS VQKLENAIEF YGAISHNKLH GLSVQVETNH  60
   61 VKLPAVVDGF ASEGIIQFFF EETQDENGFN IYILDESNRV EVYHHCEGSK EELVRDVSRF 120
  121 YSSSHDRFTY GSSFINFNLP QFYQIVKVDG REQVIPFRTK SIGNMPPANQ DHDTPLLQQY 180
  181 FS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits