YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254770770, gi...
Organism:	Tachyeres brachypterus
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254770770, gi....

Description	E-value	Query Range	Subject Range
gi\|73988393 - gi\|73988393\|ref\|XP_542374.2\| PREDICTED: similar to Hemoglobin epsilon chain [Canis familiaris]	192.0	[0..1]	[147..45]
gi\|1360668, gi\|3... - gi\|38088\|emb\|CAA37498.1\| gamma-globin-2(A) [Macaca mulatta], gi\|342109\|gb\|AAA36845.1\| gamma-globin, ...	192.0	[0..1]	[147..1]
HBG2_HYLLA - Hemoglobin subunit gamma-2 OS=Hylobates lar GN=HBG2 PE=2 SV=2	192.0	[0..1]	[147..1]
gi\|183885 - gi\|183885\|gb\|AAB50159.1\| hemoglobin gamma-G [Homo sapiens]	191.0	[0..1]	[147..6]
HBG1_PONPY - Hemoglobin subunit gamma-1 OS=Pongo pygmaeus GN=HBG1 PE=2 SV=2	191.0	[0..1]	[147..1]
HBG_MACNE - Hemoglobin subunit gamma OS=Macaca nemestrina GN=HBG PE=1 SV=1	189.0	[0..3]	[147..2]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVHWTAEEKQ LITGLWGKVN VADCGAEALA RLLIVYPWTQ RFFASFGNLS SPTAILGNPM  60
   61 VRAHGKKVLT SFGDAVKNLD NIKNTFAQLS ELHCDKLHVD PENFRLLGDI LIIVLAAHFT 120
  121 KDFTPECQAA WQKLVRVVAH ALARKYH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.69897
Match:	1hbrB
Description:	Hemoglobin, beta-chain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxygen transporter activity	12.7518923261978	bayes_pls_golite062009
hemoglobin binding	7.80994828423656	bayes_pls_golite062009
oxygen binding	7.60582561525971	bayes_pls_golite062009
hemoglobin alpha binding	6.6133698394882	bayes_pls_golite062009
organic acid binding	4.76461807092667	bayes_pls_golite062009
hemoglobin beta binding	3.70103281638942	bayes_pls_golite062009
transporter activity	2.30531874940611	bayes_pls_golite062009
substrate-specific transporter activity	2.13533596372692	bayes_pls_golite062009
binding	1.61998555357457	bayes_pls_golite062009
protein binding	1.50013290504406	bayes_pls_golite062009
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	0.436801914510671	bayes_pls_golite062009
peroxidase activity	0.422428200933926	bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor	0.422428200933926	bayes_pls_golite062009
antioxidant activity	0.282856046751109	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: