YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|226840515, gi...
Organism:	Escherichia sp. 1_1_43
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|226840515, gi....

Description	E-value	Query Range	Subject Range
gi\|75256308 - gi\|75256308\|ref\|ZP_00727980.1\| COG3045: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75239539 - gi\|75239539\|ref\|ZP_00723509.1\| COG3045: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75234559 - gi\|75234559\|ref\|ZP_00718900.1\| COG3045: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75229456 - gi\|75229456\|ref\|ZP_00716006.1\| COG3045: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75209600 - gi\|75209600\|ref\|ZP_00709818.1\| COG3045: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75198211 - gi\|75198211\|ref\|ZP_00708281.1\| COG3045: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75189105 - gi\|75189105\|ref\|ZP_00702372.1\| COG3045: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75176002 - gi\|75176002\|ref\|ZP_00696181.1\| COG3045: Uncharacterized protein conserved in bacteria [Shigella boyd... gi\|83585304 - gi\|83585304\|ref\|ZP_00923952.1\| COG3045: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75515588 - gi\|75515588\|ref\|ZP_00737745.1\| COG3045: Uncharacterized protein conserved in bacteria [Escherichia c...	268.0	[0..14]	[157..1]
gi\|238725652, gi... - gi\|77976938\|ref\|ZP_00832403.1\| COG3045: Uncharacterized protein conserved in bacteria [Yersinia inte...	268.0	[0..1]	[155..1]
gi\|77976168, gi\|... - gi\|77976168\|ref\|ZP_00831701.1\| COG3045: Uncharacterized protein conserved in bacteria [Yersinia fred...	267.0	[0..1]	[155..1]
gi\|166008669, gi... - gi\|166008669\|ref\|ZP_02229567.1\| creA protein [Yersinia pestis biovar Antiqua str. E1979001], gi\|1659... gi\|165927294, gi... - gi\|165927294\|ref\|ZP_02223126.1\| creA protein [Yersinia pestis biovar Orientalis str. F1991016], gi\|1... gi\|22127596, gi\|... - gi\|22127596\|ref\|NP_671019.1\| hypothetical protein y3722 [Yersinia pestis KIM], gi\|21960704\|gb\|AAM872... gi\|167401531, gi... - gi\|167401531\|ref\|ZP_02307025.1\| creA protein [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|167... gi\|25301064 - pir\|\|AF0056 probable exported protein YPO0457 [imported] - Yersinia pestis (strain CO92) gi\|166211976, gi... - gi\|166211976\|ref\|ZP_02238011.1\| creA protein [Yersinia pestis biovar Antiqua str. B42003004], gi\|166... gi\|51588233, gi\|... - gi\|51594951\|ref\|YP_069142.1\| hypothetical protein YPTB0600 [Yersinia pseudotuberculosis IP 32953], g... gi\|45443458, gi\|... - gi\|45443458\|ref\|NP_994997.1\| hypothetical protein YP_3726 [Yersinia pestis biovar Microtus str. 9100... gi\|16120786, gi\|... - gi\|218927654\|ref\|YP_002345529.1\| hypothetical protein YPO0457 [Yersinia pestis CO92], gi\|16120786\|re... Q66EU1\|Q66EU1_YERPS - Putative exported protein precursor - Yersinia pseudotuberculosis gi\|167054969, gi... - gi\|167426046\|ref\|ZP_02317799.1\| creA protein [Yersinia pestis biovar Mediaevalis str. K1973002], gi\|... gi\|162421180, gi... - gi\|77635660\|ref\|ZP_00797742.1\| COG3045: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|167419269, gi... - gi\|167419269\|ref\|ZP_02311022.1\| creA protein [Yersinia pestis biovar Orientalis str. MG05-1020], gi\|... gi\|77631586, gi\|... - gi\|77631586\|ref\|ZP_00794172.1\| COG3045: Uncharacterized protein conserved in bacteria [Yersinia pseu... gi\|170025822, gi... - gi\|170025822\|ref\|YP_001722327.1\| hypothetical protein YPK_3607 [Yersinia pseudotuberculosis YPIII], ... gi\|167468852 - gi\|167468852\|ref\|ZP_02333556.1\| creA protein [Yersinia pestis FV-1] gi\|186893952, gi... - gi\|186893952\|ref\|YP_001871064.1\| hypothetical protein YPTS_0623 [Yersinia pseudotuberculosis PB1/+],... gi\|149289915, gi... - gi\|150260507\|ref\|ZP_01917235.1\| putative exported protein [Yersinia pestis CA88-4125], gi\|149289915\|... gi\|229836963, gi... - gi\|229836963\|ref\|ZP_04457128.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229705906\|gb\|EEO... gi\|145212128, gi... - gi\|145600432\|ref\|YP_001164508.1\| hypothetical protein YPDSF_3177 [Yersinia pestis Pestoides F], gi\|1... gi\|229840341, gi... - gi\|229840341\|ref\|ZP_04460500.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|229690731, gi... - gi\|229842421\|ref\|ZP_04462576.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... gi\|89104420, gi\|... - gi\|89104420\|ref\|ZP_01176964.1\| COG3045: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|108781951, gi... - gi\|108810038\|ref\|YP_653954.1\| hypothetical protein YPA_4048 [Yersinia pestis Antiqua], gi\|108781951\|... gi\|229900681, gi... - gi\|229900681\|ref\|ZP_04515805.1\| conserved protein [Yersinia pestis Nepal516], gi\|229682020\|gb\|EEO781...	264.0	[0..1]	[155..1]
gi\|238718666, gi... - gi\|77961951\|ref\|ZP_00825779.1\| COG3045: Uncharacterized protein conserved in bacteria [Yersinia moll...	262.0	[0..1]	[155..1]
gi\|56416357, gi\|... - gi\|56416357\|ref\|YP_153432.1\| hypothetical protein SPA4397 [Salmonella enterica subsp. enterica serov... lcl\|NC_016856.1_... - [gene=creA] [protein=hypothetical protein] [protein_id=YP_005240932.1] [location=4856580..4857053] gi\|16767828, gi\|... - gi\|16767828\|ref\|NP_463443.1\| hypothetical protein STM4587 [Salmonella typhimurium LT2], gi\|16423154\|... gi\|205323090, gi... - gi\|205357198\|ref\|ZP_02345942.2\| protein CreA [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|25301065, gi\|... - gi\|25301065\|pir\|\|AC1075 conserved hypothetical protein creA [imported] - Salmonella enterica subsp. ... gi\|205348856, gi... - gi\|205360560\|ref\|ZP_02684331.2\| protein CreA [Salmonella enterica subsp. enterica serovar Hadar str.... gi\|16763377 - gi\|16763377\|ref\|NP_458994.1\| hypothetical protein STY4934 [Salmonella enterica subsp. enterica serov... gi\|206711511, gi... - gi\|207859708\|ref\|YP_002246359.1\| hypothetical protein SEN4343 [Salmonella enterica subsp. enterica s... gi\|29144855, gi\|... - gi\|29144855\|ref\|NP_808197.1\| hypothetical protein t4626 [Salmonella enterica subsp. enterica serovar... gi\|194443788, gi... - gi\|194443788\|ref\|YP_002043829.1\| protein CreA [Salmonella enterica subsp. enterica serovar Newport s... gi\|197248469, gi... - gi\|197248469\|ref\|YP_002149530.1\| creA protein [Salmonella enterica subsp. enterica serovar Agona str... gi\|197096756, gi... - gi\|197365279\|ref\|YP_002144916.1\| hypothetical protein SSPA4082 [Salmonella enterica subsp. enterica ... gi\|205355301, gi... - gi\|205355301\|ref\|YP_002229102.1\| hypothetical protein SG4409 [Salmonella enterica subsp. enterica se...	262.0	[0..1]	[157..1]
gi\|62130635, gi\|... - gi\|62183002\|ref\|YP_219419.1\| hypothetical protein SC4432 [Salmonella enterica subsp. enterica serova...	260.0	[0..1]	[157..1]
gi\|36783991, gi\|... - gi\|37524567\|ref\|NP_927911.1\| hypothetical protein plu0561 [Photorhabdus luminescens subsp. laumondii...	259.0	[0..1]	[156..2]
gi\|77959726 - gi\|77959726\|ref\|ZP_00823743.1\| COG3045: Uncharacterized protein conserved in bacteria [Yersinia berc...	256.0	[0..14]	[156..1]
gi\|82713649, gi\|... - gi\|82739295\|ref\|ZP_00902103.1\| creA protein [Pseudomonas putida F1], gi\|82713649\|gb\|EAP48755.1\| creA...	253.0	[0..1]	[157..1]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYKHLILSL SLIMLGPLAH AEEIGSVDTV FKMIGPDHKI VVEAFDDPDV KNVTCYVSRA  60
   61 KTGGIKGGLG LAEDTSDAAI SCQQVGPIEL SDRIKNGKAQ GEVVFKKRTS LVFKSLQVVR 120
  121 FYDAKRNALA YLAYSDKVVE GSPKNAISAV PVMPWRQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	96.148742
Match:	PF05981.3
Description:	No description for PF05981.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits