YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229901582, gi...
Organism:	Yersinia pestis Nepal516
Length:	547 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229901582, gi....

Description	E-value	Query Range	Subject Range
Q667R8\|Q667R8_YERPS - Phosphoglucomutase - Yersinia pseudotuberculosis gi\|51597239, gi\|... - gi\|51597239\|ref\|YP_071430.1\| phosphoglucomutase [Yersinia pseudotuberculosis IP 32953], gi\|51590521\|...	0.0	[2..547]	[16..561]
gi\|77629957, gi\|... - gi\|77629957\|ref\|ZP_00792543.1\| COG0033: Phosphoglucomutase [Yersinia pseudotuberculosis IP 31758], g...	0.0	[2..547]	[4..549]
gi\|22125158, gi\|... - gi\|22125158\|ref\|NP_668581.1\| phosphoglucomutase [Yersinia pestis KIM], gi\|21958019\|gb\|AAM84832.1\|AE0... gi\|45437135, gi\|... - gi\|45442271\|ref\|NP_993810.1\| phosphoglucomutase [Yersinia pestis biovar Microtus str. 91001], gi\|454... gi\|149291836, gi... - gi\|149365423\|ref\|ZP_01887458.1\| phosphoglucomutase [Yersinia pestis CA88-4125], gi\|149291836\|gb\|EDM4... gi\|145210567, gi... - gi\|145598871\|ref\|YP_001162947.1\| phosphoglucomutase [Yersinia pestis Pestoides F], gi\|145210567\|gb\|A... gi\|108780321, gi... - gi\|108808408\|ref\|YP_652324.1\| phosphoglucomutase [Yersinia pestis Antiqua], gi\|108780321\|gb\|ABG14379... gi\|108811334, gi... - gi\|108811334\|ref\|YP_647101.1\| phosphoglucomutase [Yersinia pestis Nepal516], gi\|108774982\|gb\|ABG1750...	0.0	[2..547]	[16..561]
gi\|77973067, gi\|... - gi\|77973067\|ref\|ZP_00828620.1\| COG0033: Phosphoglucomutase [Yersinia frederiksenii ATCC 33641], gi\|2...	0.0	[2..547]	[4..549]
gi\|77635006 - gi\|77635006\|ref\|ZP_00797096.1\| COG0033: Phosphoglucomutase [Yersinia pestis Angola]	0.0	[2..547]	[4..549]
gi\|77961539, gi\|... - gi\|77961539\|ref\|ZP_00825374.1\| COG0033: Phosphoglucomutase [Yersinia mollaretii ATCC 43969], gi\|2387...	0.0	[1..547]	[1..547]
gi\|50120275, gi\|... - gi\|50120275\|ref\|YP_049442.1\| phosphoglucomutase [Pectobacterium atrosepticum SCRI1043], gi\|49610801\|...	0.0	[1..547]	[1..547]
gi\|77956814, gi\|... - gi\|77956814\|ref\|ZP_00820891.1\| COG0033: Phosphoglucomutase [Yersinia bercovieri ATCC 43970], gi\|2387...	0.0	[1..547]	[1..547]
gi\|77978019 - gi\|77978019\|ref\|ZP_00833454.1\| COG0033: Phosphoglucomutase [Yersinia intermedia ATCC 29909]	0.0	[2..544]	[4..546]
gi\|84779364, gi\|... - gi\|85058844\|ref\|YP_454546.1\| phosphoglucomutase [Sodalis glossinidius str. 'morsitans'], gi\|84779364...	0.0	[1..547]	[1..547]

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Predicted Domain #1

Region A:
Residues: [1-547]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANHPRAGQP AQQSDLINVA QLTSQYYVLQ PDAEDPAHAV KFGTSGHRGS SVRHSFNEAH  60
   61 ILAIAQAIAE VRHQHGISGP CYVGKDTHAL SEPAFISVLE VLTANGVDVV VQQDNGFTPT 120
  121 PAISHVILCH NAQGKALADG IVITPSHNPP EDGGIKYNPP NGGPADTNLT SVIEKRANQL 180
  181 LSQNLKGVKR QTLDKAWQSN HLREQDLLQP YVEGLVDVVD IPAIQQAGLK LGVDPLGGSG 240
  241 IAYWQRIAEY YKLDLTLVNN AIDQTFRFMH LDHDGVIRMD CSSESAMAGL LALRDKFDLA 300
  301 FANDPDYDRH GIVTPAGLMN PNHYLAVSIN YLFQHRPQWG AGVAVGKTLV SSAMIDRVVA 360
  361 DLGRKLVEVP VGFKWFVDGL HDGSFGFGGE ESAGASFLRF NGTPWSTDKD GIIMCLLAAE 420
  421 ITAVTGKDPQ RHYDDLAQRF GAPSYNRIQA PATQAQKNAL SRLSPEMVKA NTLAGDPITA 480
  481 RLTNAPGNGA SIGGLKVMTE NGWFAARPSG TEEAYKIYCE SFLGAEHREK IEQEAVKIVS 540
  541 EVLAEAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	138.0
Match:	2fuvA
Description:	Phosphoglucomutase from Salmonella typhimurium.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits