YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|238862814, gi...
Organism:	Escherichia coli BW2952
Length:	231 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|238862814, gi....

Description	E-value	Query Range	Subject Range
gi\|110807011, gi... - gi\|110807011\|ref\|YP_690531.1\| putative chaperone [Shigella flexneri 5 str. 8401], gi\|110616559\|gb\|AB...	260.0	[0..1]	[231..1]
gi\|24053610, gi\|... - gi\|24114432\|ref\|NP_708942.1\| putative chaperone [Shigella flexneri 2a str. 301], gi\|24053610\|gb\|AAN4... gi\|30042741, gi\|... - gi\|30064482\|ref\|NP_838653.1\| putative chaperone [Shigella flexneri 2a str. 2457T], gi\|30042741\|gb\|AA...	257.0	[0..1]	[231..1]
gi\|13363494, gi\|... - gi\|15833275\|ref\|NP_312048.1\| putative chaperone [Escherichia coli O157:H7 str. Sakai], gi\|13363494\|d... gi\|217319538, gi... - gi\|217327171\|ref\|ZP_03443254.1\| gram-negative pili assembly chaperone protein [Escherichia coli O157... gi\|208741179, gi... - gi\|208821056\|ref\|ZP_03261376.1\| gram-negative pili assembly chaperone protein [Escherichia coli O157... gi\|208735393, gi... - gi\|208814116\|ref\|ZP_03255445.1\| gram-negative pili assembly chaperone protein [Escherichia coli O157... gi\|254594493, gi... - gi\|254795093\|ref\|YP_003079930.1\| predicted periplasmic pilin chaperone [Escherichia coli O157:H7 str... gi\|188024826, gi... - gi\|188024826\|ref\|ZP_02997254.1\| gram-negative pili assembly chaperone protein [Escherichia coli O157... gi\|187775803, gi... - gi\|187775803\|ref\|ZP_02992720.1\| gram-negative pili assembly chaperone protein [Escherichia coli O157... gi\|13363494, gi\|... - gi\|15833275\|ref\|NP_312048.1\| putative chaperone [Escherichia coli O157:H7], gi\|13363494\|dbj\|BAB37444... gi\|189358729, gi... - gi\|189358729\|gb\|EDU77148.1\| gram-negative pili assembly chaperone protein [Escherichia coli O157:H7 ... gi\|25299311, gi\|... - pir\|\|H85976 probable chaperone yraI [imported] - Escherichia coli (strain O157:H7, substrain EDL933... gi\|189405537, gi... - gi\|189405537\|ref\|ZP_03007847.1\| gram-negative pili assembly chaperone protein [Escherichia coli O157... gi\|15803682, gi\|... - gi\|15803682\|ref\|NP_289716.1\| putative chaperone [Escherichia coli O157:H7 EDL933], gi\|12517745\|gb\|AA... gi\|189367530, gi... - gi\|189404075\|ref\|ZP_03007321.1\| gram-negative pili assembly chaperone protein [Escherichia coli O157... gi\|189361497, gi... - gi\|189403309\|ref\|ZP_03007036.1\| gram-negative pili assembly chaperone protein [Escherichia coli O157... gi\|189010330, gi... - gi\|189010330\|ref\|ZP_03006286.1\| gram-negative pili assembly chaperone protein [Escherichia coli O157...	257.0	[0..1]	[231..1]
gi\|75260073 - gi\|75260073\|ref\|ZP_00731351.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli E... gi\|75239292 - gi\|75239292\|ref\|ZP_00723263.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli E... gi\|75211094 - gi\|75211094\|ref\|ZP_00711207.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli B... gi\|75187951 - gi\|75187951\|ref\|ZP_00701218.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli E...	246.0	[0..13]	[231..1]
gi\|75227528 - gi\|75227528\|ref\|ZP_00714287.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli B...	245.0	[0..13]	[231..1]
gi\|238799305, gi... - gi\|77960106\|ref\|ZP_00823998.1\| COG3121: P pilus assembly protein, chaperone PapD [Yersinia mollareti...	232.0	[0..1]	[230..1]
gi\|27525446 - gi\|27525446\|emb\|CAD56972.1\| fimbrial chaperone protein [Citrobacter freundii]	226.0	[0..1]	[231..1]
gi\|37526074, gi\|... - gi\|37526074\|ref\|NP_929418.1\| hypothetical protein plu2158 [Photorhabdus luminescens subsp. laumondii...	225.0	[0..7]	[230..5]
gi\|113530526, gi... - gi\|116696027\|ref\|YP_841603.1\| fimbrial assembly chaperone [Ralstonia eutropha H16], gi\|113530526\|emb...	225.0	[0..1]	[228..1]
gi\|213583567 - gi\|213583567\|ref\|ZP_03365393.1\| fimbrial chaperone protein [Salmonella enterica subsp. enterica sero... gi\|213647055 - gi\|213647055\|ref\|ZP_03377108.1\| fimbrial chaperone protein [Salmonella enterica subsp. enterica sero... gi\|213857794 - gi\|213857794\|ref\|ZP_03384765.1\| fimbrial chaperone protein [Salmonella enterica subsp. enterica sero... gi\|213999545 - gi\|213999545\|ref\|ZP_03410280.1\| fimbrial chaperone protein [Salmonella enterica subsp. enterica sero... gi\|16759517 - gi\|16759517\|ref\|NP_455134.1\| fimbrial chaperone protein [Salmonella enterica subsp. enterica serovar... gi\|25299332, gi\|... - gi\|25299332\|pir\|\|AI0569 fimbrial chaperone protein [imported] - Salmonella enterica subsp. enterica ... gi\|213052775 - gi\|213052775\|ref\|ZP_03345653.1\| fimbrial chaperone protein [Salmonella enterica subsp. enterica sero... gi\|29142710, gi\|... - gi\|29142710\|ref\|NP_806052.1\| fimbrial chaperone protein [Salmonella enterica subsp. enterica serovar... gi\|213426729 - gi\|213426729\|ref\|ZP_03359479.1\| fimbrial chaperone protein [Salmonella enterica subsp. enterica sero...	225.0	[0..1]	[230..1]

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Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKRTFAVIL TLLCSFCIGQ ALAGGIVLQR TRVIYDASRK EAALPVANKG AETPYLLQSW  60
   61 VDNIDGKSRA PFIITPPLFR LEAGDDSSLR IIKTADNLPE NKESLFYINV RAIPAKKKSD 120
  121 DVNANELTLV FKTRIKMFYR PAHLKGRVND AWKSLEFKRS DHSLNIYNPT EYYVVFAGLA 180
  181 VDKTDLTSKI EYIAPGEHKQ LPLPASGGKN VKWAAINDYG GSSGTETRPL Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.522879
Match:	1l4iA
Description:	Periplasmic chaperone SfaE; SfaE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.703836445240299	bayes_pls_golite062009
protein binding	0.478023759565866	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: